Evidence map›Paper›PMID 19833765›Full record

ArticleGenes & development2009

Ly6d marks the earliest stage of B-cell specification and identifies the branchpoint between B-cell and T-cell development.

Matthew A Inlay, Deepta Bhattacharya, Debashis Sahoo, Thomas Serwold, Jun Seita, Holger Karsunky, Sylvia K Plevritis, David L Dill, Irving L Weissman

Erratum issuedAbstract read
In one paragraph

Article in Genes & development, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 188 papers.

0numbers the graph read from it
0cells of the map it votes in
188citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

188 citing papers in PubMed.

  1. Review
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  19. Phosphatase, MgHaematologica · 2024
    Article
  20. Review

128 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Matthew A InlayInstitute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, California 94305, USA. minlay@stanford.edu
Deepta Bhattacharya
Debashis Sahoo
Thomas Serwold
Jun Seita
Holger Karsunky
Sylvia K Plevritis
David L Dill
Irving L Weissman

Funding

MOLECULAR &CELLULAR IMMUNOBIOLOGYT32AI007290 · NIAID · STANFORD UNIVERSITY · PI Sean Curtis Bendall, Olivia M Martinez · 1985 to 2026
$27.0M
TUMOR BIOLOGYT32CA009151 · NCI · STANFORD UNIVERSITY · PI CLEARY, MICHAEL L · 1985 to 2014
$5.5M
Computational Modeling of Cancer BiologyU56CA112973 · NCI · STANFORD UNIVERSITY · PI PLEVRITIS, SYLVIA KATINA · 2004 to 2009
$2.9M
THYMIC LYMPHOCYTE DEVELOPMENTR01AI047457 · NIAID · STANFORD UNIVERSITY · PI WEISSMAN, IRVING LERNER · 2000 to 2004
$1.6M
BIOLOGY AND TRANSPLANTATION OF CLPR01AI047458 · NIAID · STANFORD UNIVERSITY · PI WEISSMAN, IRVING LERNER · 2001 to 2005
$1.5M
Functional and Anatomical Characterization of the Hematopoietic Stem Cell NicheK01DK078318 · NIDDK · WASHINGTON UNIVERSITY · PI BHATTACHARYA, DEEPTA · 2007 to 2011
$714k
Application of Boolean Networks to discover stem and progenitor cellsK99CA151673 · NCI · STANFORD UNIVERSITY · PI SAHOO, DEBASHIS · 2011 to 2012
$304k
Factors that modulate thymic outputF32AI058521 · NIAID · STANFORD UNIVERSITY · PI SERWOLD, THOMAS F · 2005 to 2006
$106k
NCI NIH HHS 5U56CA112973NCI NIH HHS CA09151NCI NIH HHS K99 CA151673NCI NIH HHS T32 CA009151NCI NIH HHS U56 CA112973NIAID NIH HHS 5R01AI047457NIAID NIH HHS 5R01AI047458NIAID NIH HHS F32 AI058521NIAID NIH HHS F32AI058521NIAID NIH HHS R01 AI047457NIAID NIH HHS R01 AI047458NIAID NIH HHS T32 AI007290NIAID NIH HHS T32AI0729022NIDDK NIH HHS K01 DK078318NIDDK NIH HHS K01DK078318
6 · The paper itself

Abstract

Common lymphoid progenitors (CLPs) clonally produce both B- and T-cell lineages, but have little myeloid potential in vivo. However, some studies claim that the upstream lymphoid-primed multipotent progenitor (LMPP) is the thymic seeding population, and suggest that CLPs are primarily B-cell-restricted. To identify surface proteins that distinguish functional CLPs from B-cell progenitors, we used a new computational method of Mining Developmentally Regulated Genes (MiDReG). We identified Ly6d, which divides CLPs into two distinct populations: one that retains full in vivo lymphoid potential and produces more thymocytes at early timepoints than LMPP, and another that behaves essentially as a B-cell progenitor.

Indexed as

Cell DifferentiationAnimalsAntigens, LyB-LymphocytesCells, CulturedGene Expression Regulation, DevelopmentalGPI-Linked ProteinsLymphoid Progenitor CellsMiceMice, Inbred C57BLT-LymphocytesAntigens, LyGPI-Linked ProteinsLy6d protein, mouse

Identifiers

PMID19833765
PMCPMC2764492

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.