Evidence map›Paper›PMID 19832807›Full record

ArticleBritish journal of haematology2010

Genome wide DNA-profiling of HIV-related B-cell lymphomas.

Daniela Capello, Marta Scandurra, Giulia Poretti, Paola M V Rancoita, Michael Mian, Annunziata Gloghini, Clara Deambrogi, Maurizio Martini, Davide Rossi, Timothy C Greiner and 17 more

Open access · bronzeAbstract read
In one paragraph

Article in British journal of haematology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 76 citations in OpenAlex.

  1. Review
  2. Article
  3. HIV reservoirs in lymphomagenesis: hidden driver in the era of viral suppression?Microbiology and molecular biology reviews : MMBR · 2025
    Review
  4. B-cell-specificBlood neoplasia · 2025
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Genomic landscape of Epstein-Barr virus-positive extranodal marginal zone lymphomas of mucosa-associated lymphoid tissue.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2022
    Article
  13. Article
  14. Review
  15. Identifying transcriptional profiles and evaluating prognostic biomarkers of HIV-associated diffuse large B-cell lymphoma from Malawi.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2020
    Observational
  16. Review
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 10 institutions in 4 countries.

Daniela CapelloDepartment of Clinical and Experimental Medicine & BRMA, "Amedeo Avogadro" University of Eastern Piedmont, Novara, Italy.
Marta Scandurra
Giulia Poretti
Paola M V Rancoita
Michael Mian
Annunziata Gloghini
Clara Deambrogi
Maurizio Martini
Davide Rossi
Timothy C Greiner
Wing C Chan
Maurilio Ponzoni
Santiago M Moreno
Miguel A Piris
Vincenzo Canzonieri
Michele Spina
Umberto Tirelli
Giorgio Inghirami
Andrea Rinaldi
Emanuele Zucca
Riccardo D Favera
Franco Cavalli
Luigi Maria Larocca
Ivo Kwee
Antonino Carbone
Gianluca Gaidano
Francesco Bertoni
Institute of Oncology Research · CHUniversità degli Studi del Piemonte Orientale “Amedeo Avogadro” · ITCentro di Riferimento Oncologico · ITSpanish National Cancer Research Centre · ESUniversità Cattolica del Sacro Cuore · ITUniversity of Nebraska at Omaha · USCancer Genetics (United States) · USDalle Molle Institute for Artificial Intelligence Research · CHOspedale di Bolzano · ITUniversity of Turin · IT

Funding

Molecular Signatures to Improve Diagnosis and Outcome PrU01CA114778 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI CHAN, WING C. · 2005 to 2009
$8.7M
NCI NIH HHS U01 CA114778NCI NIH HHS UO1 CA 114778
6 · The paper itself

Abstract

Non-Hodgkin lymphomas (NHL) represent a frequent complication of human immunodeficiency virus (HIV) infection. To elucidate HIV-NHL pathogenesis, we performed a genome-wide DNA profiling based on a single nucleotide polymorphism-based microarray comparative genomic hybridization in 57 HIV-lymphomas and, for comparison, in 105 immunocompetent diffuse large B-cell lymphomas (IC-DLBCL). Genomic complexity varied across HIV-NHL subtypes. HIV-Burkitt lymphoma showed a significantly lower number of lesions than HIV-DLBCL (P = 0.032), whereas the median number of copy number changes was significantly higher in Epstein-Barr virus negative (EBV-) HIV-DLBCL (42.5, range 8-153) compared to EBV+ cases (22; range 3-41; P = 0.029). Compared to IC-DLBCL, HIV-DLBCL displayed a distinct genomic profile with no gains of 18q and specific genetic lesions. Fragile sites-associated genes, including FHIT (FRA3B), WWOX (FRA16D), DCC (FRA18B) and PARK2 (FRA6E) were frequently inactivated in HIV-NHL by interstitial deletions, and a significantly higher prevalence of FHIT alterations was observed in HIV-DLBCL compared to IC-DLBCL. The same genes involved by fragile site deletions were also frequently affected by aberrant methylation of regulative regions.

Indexed as

Polymorphism, Single NucleotideBurkitt LymphomaChromosome AberrationsDNA MethylationGene FrequencyHumansLymphoma, AIDS-RelatedLymphoma, Large B-Cell, DiffuseMicroarray AnalysisPolymerase Chain Reaction

Identifiers

PMID19832807
PMCPMC5665679
OpenAlexW2110454031

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.