Evidence map›Paper›PMID 19829306›Full record

ArticleGenes and immunity2010

A 3' UTR transition within DEFB1 is associated with chronic and aggressive periodontitis.

A S Schaefer, G M Richter, M Nothnagel, M L Laine, A Rühling, C Schäfer, N Cordes, B Noack, M Folwaczny, J Glas and 6 more

Open access · bronzeAbstract readMulticenter Study
PubMed Publisher
In one paragraph

Article in Genes and immunity, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 2 pooled it
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 2 syntheses or guidelines pooled it, 67 citations in OpenAlex.

  1. Pooled it
  2. Frontiers in genetics · 2019
    Pooled it
  3. Review
  4. Article
  5. Mechanisms and regulation of defensins in host defense.Signal transduction and targeted therapy · 2023
    Review
  6. Review
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

A S SchaeferInstitute for Clinical Molecular Biology, University Medical Center Schleswig-Holstein, Kiel, Germany. a.schaefer@ikmb.uni-kiel.de
G M Richter
M Nothnagel
M L Laine
A Rühling
C Schäfer
N Cordes
B Noack
M Folwaczny
J Glas
C Dörfer
H Dommisch
B Groessner-Schreiber
S Jepsen
B G Loos
S Schreiber
University Hospital Schleswig-Holstein · DEUniversity of Bonn · DEAcademic Center for Dentistry Amsterdam · NLClinical Research Center Kiel · DEUniversity of Lübeck · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Periodontal diseases are complex inflammatory diseases and affect up to 20% of the worldwide population. An unbalanced reaction of the immune system toward microbial pathogens is considered as the key factor in the development of periodontitis. Defensins have a strong antimicrobial function and are important contributors of the immune system toward maintaining health. Here, we present the first systematic association study of DEFB1. Using a haplotype-tagging single nucleotide polymorphism (SNP) approach, including described promoter SNPs of DEFB1, we investigated the associations of the selected variants in a large population (N=1337 cases and 2887 ethnically matched controls). The 3' untranslated region SNP, rs1047031, showed the most significant association signal for homozygous carriers of the rare A allele (P=0.002) with an increased genetic risk of 1.3 (95% confidence interval: 1.11-1.57). The association was consistent with the specific periodontitis forms: chronic periodontitis (odds ratio=2.2 (95% confidence interval: 1.16-4.35), P=0.02), and aggressive periodontitis (odds ratio=1.3 (95% confidence interval 1.04-1.68), P=0.02). Sequencing of regulatory and exonic regions of DEFB1 identified no other associated variant, pointing toward rs1047031 as likely being the causative variant. Prediction of microRNA targets identified a potential microRNA-binding site at the position of rs1047031.

Indexed as

Polymorphism, Single Nucleotide3' Untranslated RegionsAdultAggressive Periodontitisbeta-DefensinsChronic PeriodontitisFemaleGenetic Predisposition to DiseaseHumansMaleMiddle Aged3' Untranslated Regionsbeta-DefensinsDEFB1 protein, human

Identifiers

PMID19829306
OpenAlexW2074250856

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.