Evidence map›Paper›PMID 19828671›Full record

ArticlePlant physiology2009

Nucleotide polymorphism in the wheat transcriptional activator Spa influences its pattern of expression and has pleiotropic effects on grain protein composition, dough viscoelasticity, and grain hardness.

Catherine Ravel, Pierre Martre, Isabelle Romeuf, Mireille Dardevet, Redouane El-Malki, Jacques Bordes, Nathalie Duchateau, Dominique Brunel, François Balfourier, Gilles Charmet

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In one paragraph

Article in Plant physiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
5.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 72 citations in OpenAlex.

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  14. Genetic dissection of a major QTL for kernel weight spanning the Rht-B1 locus in bread wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Catherine RavelINRA, UMR1095, Genetics, Diversity, and Ecophysiology of Cereals, F-63100 Clermont-Ferrand, France. catherine.ravel@clermont.inra.fr
Pierre Martre
Isabelle Romeuf
Mireille Dardevet
Redouane El-Malki
Jacques Bordes
Nathalie Duchateau
Dominique Brunel
François Balfourier
Gilles Charmet
Génétique, Diversité, Écophysiologie des Céréales · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Storage protein activator (SPA) is a key regulator of the transcription of wheat (Triticum aestivum) grain storage protein genes and belongs to the Opaque2 transcription factor subfamily. We analyzed the sequence polymorphism of the three homoeologous Spa genes in hexaploid wheat. The level of polymorphism in these genes was high particularly in the promoter. The deduced protein sequences of each homoeolog and haplotype show greater than 93% identity. Two major haplotypes were studied for each Spa gene. The three Spa homoeologs have similar patterns of expression during grain development, with a peak in expression around 300 degree days after anthesis. On average, Spa-B is 10 and seven times more strongly expressed than Spa-A and Spa-D, respectively. The haplotypes are associated with significant quantitative differences in Spa expression, especially for Spa-A and Spa-D. Significant differences were found in the quantity of total grain nitrogen allocated to the gliadin protein fractions for the Spa-A haplotypes, whereas the synthesis of glutenins is not modified. Genetic association analysis between Spa and dough viscoelasticity revealed that Spa polymorphisms are associated with dough tenacity, extensibility, and strength. Except for Spa-A, these associations can be explained by differences in grain hardness. No association was found between Spa markers and the average single grain dry mass or grain protein concentration. These results demonstrate that in planta Spa is involved in the regulation of grain storage protein synthesis. The associations between Spa and dough viscoelasticity and grain hardness strongly suggest that Spa has complex pleiotropic functions during grain development.

Indexed as

FlourGene Expression Regulation, PlantPolymorphism, GeneticAmino Acid SequenceElasticityFlowersGene Expression Regulation, DevelopmentalGliadinHaplotypesHardnessLinkage DisequilibriumMolecular Sequence DataNitrogenNucleotidesPhenotypePlant ProteinsGliadinNitrogenNucleotidesPlant Proteinsstorage protein activatorTrans-Activators

Identifiers

PMID19828671
PMCPMC2785959
OpenAlexW2168901992

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.