Evidence map›Paper›PMID 19828447›Full record

ArticleThe Journal of biological chemistry2009

Regulation of iron homeostasis in Arabidopsis thaliana by the clock regulator time for coffee.

Céline Duc, Françoise Cellier, Stéphane Lobréaux, Jean-François Briat, Frédéric Gaymard

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
6.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 72 citations in OpenAlex.

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  11. Iron metabolism strategies in diatoms.Journal of experimental botany · 2021
    Review
  12. Article
  13. Regulation of Iron Homeostasis and Use in Chloroplasts.International journal of molecular sciences · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Céline DucLaboratoire de Biochimie et Physiologie Moléculaire des Plantes, UMR 5004, Agro-M/CNRS/Institut National de la Recherche Agronomique/Université Montpelier II, 34060 Montpellier Cedex 1, France.
Françoise CellierLaboratoire de Biochimie et Physiologie Moléculaire des Plantes, UMR 5004, Agro-M/CNRS/Institut National de la Recherche Agronomique/Université Montpelier II, 34060 Montpellier Cedex 1, France.
Stéphane LobréauxLaboratoire Plastes et Différenciation Cellulaire, Universite Joseph Fourier Grenoble 1, Centre de Recherche sur les Macromolécules Organisées, BP 53, 38041 Grenoble Cedex 9, France.
Jean-François BriatLaboratoire de Biochimie et Physiologie Moléculaire des Plantes, UMR 5004, Agro-M/CNRS/Institut National de la Recherche Agronomique/Université Montpelier II, 34060 Montpellier Cedex 1, France.
Frédéric GaymardLaboratoire de Biochimie et Physiologie Moléculaire des Plantes, UMR 5004, Agro-M/CNRS/Institut National de la Recherche Agronomique/Université Montpelier II, 34060 Montpellier Cedex 1, France. Electronic address: gaymard@supagro.inra.fr.
Institut des Sciences des Plantes de Montpellier · FRCentre National de la Recherche Scientifique · FRUniversité Joseph Fourier · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In plants, iron homeostasis is tightly regulated to supply sufficient amounts of this metal for an optimal growth while preventing excess accumulation to avoid oxidative stress. To identify new regulators of iron homeostasis, a luciferase-based genetic screen using the Arabidopsis AtFer1 ferritin promoter as a target was developed. This screen identified TIME FOR COFFEE (TIC) as a regulator of AtFer1 gene expression. TIC was previously described as a nuclear regulator of the circadian clock. Mutants in the TIC gene exhibited a chlorotic phenotype rescued by exogenous iron addition and are hypersensitive to iron during the early stages of development. We showed that iron overload-responsive genes are regulated by TIC and by the central oscillator of the circadian clock. TIC represses their expression under low iron conditions, and its activity requires light and light/dark cycles. Regarding AtFer1, this repression is independent of the previously characterized cis-acting element iron-dependent regulatory sequence, known to be involved in AtFer1 repression. These results showed that the regulation of iron homeostasis in plants is a major output of the TIC- and central oscillator-dependent signaling pathways.

Indexed as

ArabidopsisArabidopsis ProteinsCircadian RhythmFerritinsGene Expression Regulation, PlantHomeostasisIronMutationNuclear ProteinsSignal TransductionArabidopsis ProteinsFerritinsIronNuclear ProteinsTIC protein, Arabidopsis

Identifiers

PMID19828447
PMCPMC2794743
OpenAlexW1997300107

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.