ArticleBMC bioinformatics2009
XML-based approaches for the integration of heterogeneous bio-molecular data.
Article in BMC bioinformatics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Who cites it
11 citing papers in PubMed.
- An epidemiological knowledge graph extracted from the World Health Organization's Disease Outbreak News.Scientific data · 2025Article
- An ontology-based knowledge graph for representing interactions involving RNA molecules.Scientific data · 2024Article
- UNIPred-Web: a web tool for the integration and visualization of biomolecular networks for protein function prediction.BMC bioinformatics · 2019Article
- A study on multi-omic oscillations in Escherichia coli metabolic networks.BMC bioinformatics · 2018Article
- Generation of open biomedical datasets through ontology-driven transformation and integration processes.Journal of biomedical semantics · 2016Article
- Hierarchical ensemble methods for protein function prediction.ISRN bioinformatics · 2014Review
- Semantically Interoperable XML Data.International journal of semantic computing · 2013Article
- Development of a relational database to capture and merge clinical history with the quantitative results of radionuclide renography.Journal of nuclear medicine technology · 2012Article
- Exploring and linking biomedical resources through multidimensional semantic spaces.BMC bioinformatics · 2012Article
- PeptideMine--a webserver for the design of peptides for protein-peptide binding studies derived from protein-protein interactomes.BMC bioinformatics · 2010Article
- Managing and Querying Image Annotation and Markup in XML.Proceedings of SPIE--the International Society for Optical Engineering · 2010Article
Corrections and comments
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe today's public database infrastructure spans a very large collection of heterogeneous biological data, opening new opportunities for molecular biology, bio-medical and bioinformatics research, but raising also new problems for their integration and computational processing.
resultsIn this paper we survey the most interesting and novel approaches for the representation, integration and management of different kinds of biological data by exploiting XML and the related recommendations and approaches. Moreover, we present new and interesting cutting edge approaches for the appropriate management of heterogeneous biological data represented through XML.
conclusionXML has succeeded in the integration of heterogeneous biomolecular information, and has established itself as the syntactic glue for biological data sources. Nevertheless, a large variety of XML-based data formats have been proposed, thus resulting in a difficult effective integration of bioinformatics data schemes. The adoption of a few semantic-rich standard formats is urgent to achieve a seamless integration of the current biological resources.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.