Evidence map›Paper›PMID 19825830›Full record

ArticlePhysiological genomics2009

Effect of PPARgamma inhibition on pulmonary endothelial cell gene expression: gene profiling in pulmonary hypertension.

Jing Tian, Anita Smith, John Nechtman, Robert Podolsky, Saurabh Aggarwal, Connie Snead, Sanjiv Kumar, Manal Elgaish, Peter Oishi, Agnes Göerlach and 7 more

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Physiological genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT01825369 (Phase 1 Study of the Safety and Pharmacokinetics of Perioperative IV L-carnitine Administration in Patients With Congenital Heart Disease With Increased Pulmonary Blood Flow), which is not on this map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01825369 phase1withdrawnnot on this mapstarted 2014, after this paper: background citation

Phase 1 Study of the Safety and Pharmacokinetics of Perioperative IV L-carnitine Administration in Patients With Congenital Heart Disease With Increased Pulmonary Blood Flow

TypeinterventionalSponsorUniversity of California, San FranciscoRan2014 to 2020Enrolled0ConditionsHeart Septal Defects, Ventricular, Atrioventricular Septal DefectArmsIV L-carnitine
3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 48 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Review
  6. Review
  7. Cardiovascular Effects Mediated by HMMR and CD44.Mediators of inflammation · 2021
    Review
  8. Repurposing rosiglitazone, a PPAR-γ agonist and oral antidiabetic, as an inhaled formulation, for the treatment of PAH.Journal of controlled release : official journal of the Controlled Release Society · 2018
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

Jing TianPulmonary Vascular Disease Program, Vascular Biology Center, Medical College of Georgia, Augusta, Georgia 30912, USA.
Anita Smith
John Nechtman
Robert Podolsky
Saurabh Aggarwal
Connie Snead
Sanjiv Kumar
Manal Elgaish
Peter Oishi
Agnes Göerlach
Sohrab Fratz
John Hess
John D Catravas
Alexander D Verin
Jeffrey R Fineman
Jin-Xiong She
Stephen M Black
Center for Vascular Biology Research · USAugusta University · USDeutsches Herzzentrum München · DEPediatrics and Genetics · USUniversity of California, San Francisco · US

Funding

PERINATAL PULMONARY HYPERTENSION: DEVELOPMENT MEDIATORSR01HL061284 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FINEMAN, JEFFREY R · 1999 to 2016
$8.3M
PERINATAL REGULATION OF THE ENDOTHELIAL NOS GENER01HL060190 · NHLBI · UNIVERSITY OF MONTANA · PI Stephen M Black · 1998 to 2026
$7.1M
ROS in Pulmonary Hypertension: Role of ADMAR01HL067841 · NHLBI · UNIVERSITY OF MONTANA · PI BLACK, STEPHEN M · 2002 to 2011
$2.6M
NO-mediated signaling in endothelial cellsR01HL070061 · NHLBI · UNIVERSITY OF MONTANA · PI BLACK, STEPHEN M · 2003 to 2006
$1.6M
Perinatal regulation of TGF-beta1 during vascular remodelingR01HL084739 · NHLBI · AUGUSTA UNIVERSITY · PI BLACK, STEPHEN M · 2007 to 2010
$1.5M
ATP in Lung Endothelial Barrier EnhancementR01HL083327 · NHLBI · UNIVERSITY OF CHICAGO · PI VERIN, ALEXANDER D · 2006 to 2009
$1.5M
ALK/SMAD Signaling in TGF beta-induced EC PermeabilityR01HL080675 · NHLBI · UNIVERSITY OF CHICAGO · PI VERIN, ALEXANDER D · 2005 to 2008
$1.5M
ENOS Dimer Disruption and Endothelial DysfunctionR01HL072123 · NHLBI · UNIVERSITY OF MONTANA · PI BLACK, STEPHEN M · 2003 to 2006
$1.1M
Role of altered carnitine metabolism in perinatal endothelial dysfunctionR21HD057406 · NICHD · AUGUSTA UNIVERSITY · PI BLACK, STEPHEN M · 2008 to 2009
$423k
NHLBI NIH HHS 5T32HL-06699NHLBI NIH HHS HL-084739NHLBI NIH HHS HL-60190NHLBI NIH HHS HL-61284NHLBI NIH HHS HL-67841NHLBI NIH HHS HL-70061NHLBI NIH HHS HL-72123NHLBI NIH HHS R01 HL080675NHLBI NIH HHS R01 HL083327NICHD NIH HHS R21HD-057406
6 · The paper itself

Abstract

Peroxisome proliferator-activated receptor type gamma (PPARgamma) is a subgroup of the PPAR transcription factor family. Recent studies indicate that loss of PPARgamma is associated with the development of pulmonary hypertension (PH). We hypothesized that the endothelial dysfunction associated with PPARgamma inhibition may play an important role in the disease process by altering cellular gene expression and signaling cascades. We utilized microarray analysis to determine if PPARgamma inhibition induced changes in gene expression in pulmonary arterial endothelial cells (PAEC). We identified 100 genes and expressed sequence tags (ESTs) that were upregulated by >1.5-fold and 21 genes and ESTs that were downregulated by >1.3-fold (P < 0.05) by PPARgamma inhibition. The upregulated genes can be broadly classified into four functional groups: cell cycle, angiogenesis, ubiquitin system, and zinc finger proteins. The genes with the highest fold change in expression: hyaluronan-mediated motility receptor (HMMR), VEGF receptor 2 (Flk-1), endothelial PAS domain protein 1 (EPAS1), basic fibroblast growth factor (FGF-2), and caveolin-1 in PAEC were validated by real time RT-PCR. We further validated the upregulation of HMMR, Flk-1, FGF2, and caveolin-1 by Western blot analysis. In keeping with the microarray results, PPARgamma inhibition led to re-entry of cell cycle at G(1)/S phase and cyclin C upregulation. PPARgamma inhibition also exacerbated VEGF-induced endothelial barrier disruption. Finally we confirmed the downregulation of PPARgamma and the upregulation of HMMR, Flk-1, FGF2, and Cav-1 proteins in the peripheral lung tissues of an ovine model of PH. In conclusion, we have identified an array of endothelial genes modulated by attenuated PPARgamma signaling that may play important roles in the development of PH.

Indexed as

Gene Expression ProfilingAnilidesAnimalsArteriesBlood-Air BarrierCattleCell AdhesionCell CycleCell ProliferationDisease Models, AnimalEndothelial CellsGene Expression RegulationHumansHypertension, PulmonaryLungNeovascularization, Physiologic2-chloro-5-nitrobenzanilideAnilidesPPAR gammaUbiquitinVascular Endothelial Growth Factor A

Identifiers

PMID19825830
PMCPMC2807211
OpenAlexW2100572154

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.