ArticleGenome biology2009
Deep short-read sequencing of chromosome 17 from the mouse strains A/J and CAST/Ei identifies significant germline variation and candidate genes that regulate liver triglyceride levels.
Article in Genome biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
22 citing papers in PubMed, 38 citations in OpenAlex.
- Mouse strain-specific polymorphic provirus functions as cis-regulatory element leading to epigenomic and transcriptomic variations.Nature communications · 2021Article
- Bridging the Gap between Vertebrate Cytogenetics and Genomics with Single-Chromosome Sequencing (ChromSeq).Genes · 2021Review
- Article
- Contrasting origin of B chromosomes in two cervids (Siberian roe deer and grey brocket deer) unravelled by chromosome-specific DNA sequencing.BMC genomics · 2016Article
- The Mouse Genomes Project: a repository of inbred laboratory mouse strain genomes.Mammalian genome : official journal of the International Mammalian Genome Society · 2015Article
- PWD/PhJ mice have a genetically determined increase in nutrient-stimulated insulin secretion.Mammalian genome : official journal of the International Mammalian Genome Society · 2015Article
- Constitutive Activation of the Nlrc4 Inflammasome Prevents Hepatic Fibrosis and Promotes Hepatic Regeneration after Partial Hepatectomy.Mediators of inflammation · 2015Article
- Advances in genomics of bony fish.Briefings in functional genomics · 2014Review
- Genetic resistance to liver fibrosis on A/J mouse chromosome 17.Alcoholism, clinical and experimental research · 2013Article
- Massively-parallel sequencing of genes on a single chromosome: a comparison of solution hybrid selection and flow sorting.BMC genomics · 2013Article
- CNVeM: copy number variation detection using uncertainty of read mapping.Journal of computational biology : a journal of computational molecular cell biology · 2013Article
- Chromosomes in the flow to simplify genome analysis.Functional & integrative genomics · 2012Review
- Current challenges in de novo plant genome sequencing and assembly.Genome biology · 2012Review
- The mouse genetics toolkit: revealing function and mechanism.Genome biology · 2011Review
- Efficient algorithms for tandem copy number variation reconstruction in repeat-rich regions.Bioinformatics (Oxford, England) · 2011Article
- Subspecific origin and haplotype diversity in the laboratory mouse.Nature genetics · 2011Article
- Integrated genomics of susceptibility to alkylator-induced leukemia in mice.BMC genomics · 2010Article
- A comprehensive genetic analysis of candidate genes regulating response to Trypanosoma congolense infection in mice.PLoS neglected tropical diseases · 2010Article
- Mouse chromosome 17 candidate modifier genes for thrombosis.Mammalian genome : official journal of the International Mammalian Genome Society · 2010Article
- Article
Corrections and comments
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Authors and funding
16 authors at 3 institutions in 2 countries.
Funding
Abstract
Genome sequences are essential tools for comparative and mutational analyses. Here we present the short read sequence of mouse chromosome 17 from the Mus musculus domesticus derived strain A/J, and the Mus musculus castaneus derived strain CAST/Ei. We describe approaches for the accurate identification of nucleotide and structural variation in the genomes of vertebrate experimental organisms, and show how these techniques can be applied to help prioritize candidate genes within quantitative trait loci.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.