Evidence map›Paper›PMID 19822009›Full record

ArticleBMC genomics2009

A subset of the diverse COG0523 family of putative metal chaperones is linked to zinc homeostasis in all kingdoms of life.

Crysten E Haas, Dmitry A Rodionov, Janette Kropat, Davin Malasarn, Sabeeha S Merchant, Valérie de Crécy-Lagard

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
7.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 163 citations in OpenAlex.

  1. Review
  2. Microbiology spectrum · 2026
    Article
  3. Article
  4. Article
  5. A nuclear CobW/WW-domain factor represses the COProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  6. Article
  7. Zinc-metallochaperones ofMicrobiology spectrum · 2025
    Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Biosynthesis and function of 7-deazaguanine derivatives in bacteria and phages.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  17. Article
  18. Article
  19. Zinc homeostasis in Pseudomonas.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2023
    Review
  20. Transcriptional Response ofBritish journal of biomedical science · 2023
    Article

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Crysten E HaasDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL, USA. crys66@ufl.edu
Dmitry A Rodionov
Janette Kropat
Davin Malasarn
Sabeeha S Merchant
Valérie de Crécy-Lagard
University of California, Los Angeles · USUniversity of Florida · USInstitute for Information Transmission Problems · RU

Funding

Nutritional Cu Signaling and HomeostasisR01GM042143 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SABEEHA MERCHANT · 1995 to 2026
$4.6M
Nutritional Copper Signaling and HomeostasisR37GM042143 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MERCHANT, SABEEHA · 2011 to 2020
$4.3M
Dissecting the Regulation of Zinc-HomeostasisF32GM083562 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MALASARN, DAVIN · 2008 to 2010
$97k
CU-DEPENDENT TRANSCRIPTIONAL REGULATIONR29GM042143 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MERCHANT, SABEEHA · 1989 to 1993
–
NIGMS NIH HHS 1F32GM083562NIGMS NIH HHS F32 GM083562NIGMS NIH HHS GM42143NIGMS NIH HHS R01 GM042143NIGMS NIH HHS R37 GM042143
6 · The paper itself

Abstract

backgroundCOG0523 proteins are, like the nickel chaperones of the UreG family, part of the G3E family of GTPases linking them to metallocenter biosynthesis. Even though the first COG0523-encoding gene, cobW, was identified almost 20 years ago, little is known concerning the function of other members belonging to this ubiquitous family.

resultsBased on a combination of comparative genomics, literature and phylogenetic analyses and experimental validations, the COG0523 family can be separated into at least fifteen subgroups. The CobW subgroup involved in cobalamin synthesis represents only one small sub-fraction of the family. Another, larger subgroup, is suggested to play a predominant role in the response to zinc limitation based on the presence of the corresponding COG0523-encoding genes downstream from putative Zur binding sites in many bacterial genomes. Zur binding sites in these genomes are also associated with candidate zinc-independent paralogs of zinc-dependent enzymes. Finally, the potential role of COG0523 in zinc homeostasis is not limited to Bacteria. We have predicted a link between COG0523 and regulation by zinc in Archaea and show that two COG0523 genes are induced upon zinc depletion in a eukaryotic reference organism, Chlamydomonas reinhardtii.

conclusionThis work lays the foundation for the pursuit by experimental methods of the specific role of COG0523 members in metal trafficking. Based on phylogeny and comparative genomics, both the metal specificity and the protein target(s) might vary from one COG0523 subgroup to another. Additionally, Zur-dependent expression of COG0523 and putative paralogs of zinc-dependent proteins may represent a mechanism for hierarchal zinc distribution and zinc sparing in the face of inadequate zinc nutrition.

Indexed as

PhylogenyAlgal ProteinsAnimalsArchaeaArchaeal ProteinsBacteriaBacterial ProteinsChlamydomonas reinhardtiiComparative Genomic HybridizationGTP PhosphohydrolasesHomeostasisMolecular ChaperonesRegulonSequence Analysis, ProteinZincAlgal ProteinsArchaeal ProteinsBacterial ProteinsGTP PhosphohydrolasesMolecular ChaperonesZinc

Identifiers

PMID19822009
PMCPMC2770081
OpenAlexW2164079892

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.