ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2009
Development, polymorphism, and cross-taxon utility of EST-SSR markers from safflower (Carthamus tinctorius L.).
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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Who cites it
26 citing papers in PubMed.
- Generation and characterization of novel transcriptome-derived SSR markers for genetic applications in blueberry.Scientific reports · 2025Article
- The Carthamus tinctorius L. genome sequence provides insights into synthesis of unsaturated fatty acids.BMC genomics · 2024Article
- Article
- Validation of candidate gene-based EST-SSR markers for sugar yield in sugarcane.Frontiers in plant science · 2023Article
- Applications of Molecular Markers for Developing Abiotic-Stress-Resilient Oilseed Crops.Life (Basel, Switzerland) · 2022Review
- Occurrence of simple sequence repeats in cDNA sequences of safflower (Frontiers in plant science · 2022Article
- Uncovering the genetic diversity of yams (Ecology and evolution · 2021Article
- Genomic prediction and genomic heritability of grain yield and its related traits in a safflower genebank collection.The plant genome · 2021Article
- The development of SSR markers based on RNA-sequencing and its validation between and within Carex L. species.BMC plant biology · 2021Article
- Genetic Diversity and DNA Fingerprints of Three Important Aquatic Vegetables by EST-SSR Markers.Scientific reports · 2019Article
- Assessment of genetic diversity and population genetic structure ofJournal of genetics · 2018Article
- Association Mapping for Important Agronomic Traits in Safflower (Frontiers in plant science · 2018Article
- Development, characterization and cross-amplification of microsatellite markers for Chrysolaena obovata, an important Asteraceae from Brazilian Cerrado.Journal of genetics · 2017Article
- Article
- Population Genetics of the Rubber-Producing Russian Dandelion (Taraxacum kok-saghyz).PloS one · 2016Article
- Genetic differentiation and hybrid identification using microsatellite markers in closely related wild species.AoB PLANTS · 2015Article
- Expressed Sequence Tags Analysis and Design of Simple Sequence Repeats Markers from a Full-Length cDNA Library in Perilla frutescens (L.).International journal of genomics · 2015Article
- A case study on the genetic origin of the high oleic acid trait through FAD2-1 DNA sequence variation in safflower (Carthamus tinctorius L.).Frontiers in plant science · 2015Article
- Article
- Genetic analysis of safflower domestication.BMC plant biology · 2014Article
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9 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Due to their highly polymorphic and codominant nature, simple-sequence repeat (SSR) markers are a common choice for assaying genetic diversity and genetic mapping. In this paper, we describe the generation of an expressed-sequence tag (EST) collection for the oilseed crop safflower and the subsequent development of EST-SSR markers for the genetic analysis of safflower and related species. We assembled 40,874 reads into 19,395 unigenes, of which 4,416 (22.8%) contained at least one SSR. Primer pairs were developed and tested for 384 of these loci, resulting in a collection of 104 polymorphic markers that amplify reliably across 27 accessions (3 species) of the genus Carthamus. These markers exhibited a high level of polymorphism, with an average of 6.0 +/- 0.4 alleles per locus and an average gene diversity of 0.54 +/- 0.03 across Carthamus species. In terms of cross-taxon transferability, 50% of these primer pairs produced an amplicon in at least one other species in the Asteraceae, and 28% produced an amplicon in at least one species outside the safflower subfamily (i.e., lettuce, sunflower, and/or Gerbera). These markers represent a valuable resource for the genetic analysis of safflower and related species, and also have the potential to facilitate comparative map-based analyses across a broader array of taxa within the Asteraceae.
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