Evidence map›Paper›PMID 19820083›Full record

ArticleJournal of bacteriology2009

Cryo-electron tomography elucidates the molecular architecture of Treponema pallidum, the syphilis spirochete.

Jacques Izard, Christian Renken, Chyong-Ere Hsieh, Daniel C Desrosiers, Star Dunham-Ems, Carson La Vake, Linda L Gebhardt, Ronald J Limberger, David L Cox, Michael Marko and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 111 citations in OpenAlex.

  1. Putative mechanisms of ocular inflammation in syphilis.Journal of ophthalmic inflammation and infection · 2026
    Review
  2. Article
  3. Article
  4. In Situ Structural Analysis of Leptospira spp. by Electron Cryotomography.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  5. Frontiers in immunology · 2026
    Article
  6. Update on syphilis diagnostics.Current opinion in infectious diseases · 2025
    Review
  7. Article
  8. Article
  9. Development and utilization ofbioRxiv : the preprint server for biology · 2024
    Article
  10. Immunodominant extracellular loops ofbioRxiv : the preprint server for biology · 2024
    Article
  11. In-Depth Proteome Coverage of In Vitro-CulturedJournal of proteome research · 2024
    Article
  12. CDC Laboratory Recommendations for Syphilis Testing, United States, 2024.MMWR. Recommendations and reports : Morbidity and mortality weekly report. Recommendations and reports · 2024
    Article
  13. Proteomic analysis of theFrontiers in microbiology · 2024
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Jacques IzardDepartment of Molecular Genetics, The Forsyth Institute, Boston, Massachusetts 021351, USA.
Christian Renken
Chyong-Ere Hsieh
Daniel C Desrosiers
Star Dunham-Ems
Carson La Vake
Linda L Gebhardt
Ronald J Limberger
David L Cox
Michael Marko
Justin D Radolf
New York State Department of Health · USWadsworth Center · USCenters for Disease Control and Prevention · USHarvard University · USUConn Health · US

Funding

ZERNIKE PHASE-CONTRAST IMAGINGP41RR001219 · NCRR · WADSWORTH CENTER · PI WAGENKNECHT, TERENCE C · 1985 to 2010
$11.1M
Treponema pallidum Outer Membrane Proteins and Transition Metal AcquisitionR01AI026756 · NIAID · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI RADOLF, JUSTIN D · 1992 to 2017
$5.1M
T.pallidum Membrane Immunogens and Anti-Oxidant DefenseR37AI026756 · NIAID · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI RADOLF, JUSTIN D · 2002 to 2006
$1.8M
Treponema denticola cytoskeletal filaments and oral infectionR21DE017106 · NIDCR · ADA FORSYTH INSTITUTE, INC. · PI IZARD, JACQUES G. · 2007 to 2008
$440k
MEMBRANE PROTEINS OF TREPONEMA PALLIDUMR29AI026756 · NIAID · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI RADOLF, JUSTIN D. · 1988 to 1991
–
NCRR NIH HHS P41 RR001219NCRR NIH HHS P41 RR01212NIAID NIH HHS AI-26756NIAID NIH HHS R01 AI026756NIAID NIH HHS R37 AI026756NIDCR NIH HHS DE017106NIDCR NIH HHS R21 DE017106
6 · The paper itself

Abstract

Cryo-electron tomography (CET) was used to examine the native cellular organization of Treponema pallidum, the syphilis spirochete. T. pallidum cells appeared to form flat waves, did not contain an outer coat and, except for bulges over the basal bodies and widening in the vicinity of flagellar filaments, displayed a uniform periplasmic space. Although the outer membrane (OM) generally was smooth in contour, OM extrusions and blebs frequently were observed, highlighting the structure's fluidity and lack of attachment to underlying periplasmic constituents. Cytoplasmic filaments converged from their attachment points opposite the basal bodies to form arrays that ran roughly parallel to the flagellar filaments along the inner surface of the cytoplasmic membrane (CM). Motile treponemes stably attached to rabbit epithelial cells predominantly via their tips. CET revealed that T. pallidum cell ends have a complex morphology and assume at least four distinct morphotypes. Images of dividing treponemes and organisms shedding cell envelope-derived blebs provided evidence for the spirochete's complex membrane biology. In the regions without flagellar filaments, peptidoglycan (PG) was visualized as a thin layer that divided the periplasmic space into zones of higher and lower electron densities adjacent to the CM and OM, respectively. Flagellar filaments were observed overlying the PG layer, while image modeling placed the PG-basal body contact site in the vicinity of the stator-P-collar junction. Bioinformatics and homology modeling indicated that the MotB proteins of T. pallidum, Treponema denticola, and Borrelia burgdorferi have membrane topologies and PG binding sites highly similar to those of their well-characterized Escherichia coli and Helicobacter pylori orthologs. Collectively, our results help to clarify fundamental differences in cell envelope ultrastructure between spirochetes and gram-negative bacteria. They also confirm that PG stabilizes the flagellar motor and enable us to propose that in most spirochetes motility results from rotation of the flagellar filaments against the PG.

Indexed as

Electron Microscope TomographyAmino Acid SequenceAnimalsBacterial AdhesionBacterial ProteinsCell MembraneCell WallEpithelial CellsFlagellaHumansImaging, Three-DimensionalMaleModels, MolecularMolecular Sequence DataOrganellesProtein Structure, TertiaryBacterial ProteinsMotB protein, Bacteria

Identifiers

PMID19820083
PMCPMC2786590
OpenAlexW2067664532

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.