Evidence map›Paper›PMID 19819874›Full record

ArticleThe Journal of biological chemistry2009

Regulation of TMEM16A chloride channel properties by alternative splicing.

Loretta Ferrera, Antonella Caputo, Ifeoma Ubby, Erica Bussani, Olga Zegarra-Moran, Roberto Ravazzolo, Franco Pagani, Luis J V Galietta

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 135 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
135citing papers in PubMed, 1 pooled it
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

135 citing papers in PubMed, 1 synthesis or guideline pooled it, 204 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. The role of anoctamin 1 in liver disease.Journal of cellular and molecular medicine · 2024
    Review
  6. Review
  7. Article
  8. Article
  9. KCNE1 does not shift TMEM16A from a CaPflugers Archiv : European journal of physiology · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Polymodal Control of TMEM16x Channels and Scramblases.International journal of molecular sciences · 2022
    Review
  14. Review
  15. Review
  16. Article
  17. Article
  18. The CaActa pharmaceutica Sinica. B · 2021
    Review
  19. Differential Regulation of CaInternational journal of molecular sciences · 2021
    Article
  20. Divalent Cation Modulation of Ion Permeation in TMEM16 Proteins.International journal of molecular sciences · 2021
    Article

75 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Loretta FerreraLaboratory of Molecular Genetics, Istituto Giannina Gaslini, Largo G. Gaslini 5, 16147 Genova.
Antonella Caputo
Ifeoma Ubby
Erica Bussani
Olga Zegarra-Moran
Roberto Ravazzolo
Franco Pagani
Luis J V Galietta
Istituto Giannina Gaslini · ITInternational Centre for Genetic Engineering and Biotechnology · IT

Funding

SynthesisP30DK072517 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI VERKMAN, ALAN S · 2005 to 2022
$18.1M
NIDDK NIH HHS P30 DK072517
6 · The paper itself

Abstract

Expression of TMEM16A protein is associated with the activity of Ca(2+)-activated Cl(-) channels. TMEM16A primary transcript undergoes alternative splicing. thus resulting in the generation of multiple isoforms. We have determined the pattern of splicing and assessed the functional properties of the corresponding TMEM16A variants. We found three alternative exons, 6b, 13, and 15, coding for segments of 22, 4, and 26 amino acids, respectively, which are differently spliced in human organs. By patch clamp experiments on transfected cells, we found that skipping of exon 6b changes the Ca(2+) sensitivity by nearly 4-fold, resulting in Cl(-) currents requiring lower Ca(2+) concentrations to be activated. At the membrane potential of 80 mV, the apparent half-effective concentration decreases from 350 to 90 nm when the segment corresponding to exon 6b is excluded. Skipping of exon 13 instead strongly reduces the characteristic time-dependent activation observed for Ca(2+)-activated Cl(-) channels at positive membrane potentials. This effect was also obtained by deleting only the second pair of amino acids corresponding to exon 13. Alternative splicing appears as an important mechanism to regulate the voltage and Ca(2+) dependence of the TMEM16A-dependent Cl(-) channels in a tissue-specific manner.

Indexed as

Alternative SplicingGene Expression ProfilingAnionsAnoctamin-1CalciumCell LineChloride ChannelsDose-Response Relationship, DrugHumansIon Channel GatingIon TransportLuminescent ProteinsMembrane PotentialsMembrane ProteinsMicroscopy, FluorescenceNeoplasm ProteinsAnionsANO1 protein, humanAnoctamin-1CalciumChloride ChannelsLuminescent ProteinsMembrane ProteinsNeoplasm ProteinsProtein Isoforms

Identifiers

PMID19819874
PMCPMC2785179
OpenAlexW2153668688

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.