Evidence map›Paper›PMID 19815696›Full record

ArticleThe Journal of molecular diagnostics : JMD2009

Ultrasensitive detection of KRAS2 mutations in bile and serum from patients with biliary tract carcinoma using LigAmp technology.

Chanjuan Shi, Arjun Chandrasekaran, Paul J Thuluvath, Collins Karikari, Pedram Argani, Michael Goggins, Anirban Maitra, James R Eshleman

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of molecular diagnostics : JMD, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Chanjuan ShiThe Johns Hopkins Medical Institutions, The Sol Goldman Pancreatic Cancer Research Center. David Koch Cancer Research Building-II, Suite 341. 1550 Orleans St. Baltimore, MD 21231, USA. chanjuanshi@gmail.com
Arjun Chandrasekaran
Paul J Thuluvath
Collins Karikari
Pedram Argani
Michael Goggins
Anirban Maitra
James R Eshleman
Johns Hopkins University · USCancer Research Center · USMercy Medical Center · US

Funding

Markers of Early Pancreatic CancerR01CA120432 · NCI · JOHNS HOPKINS UNIVERSITY · PI GOGGINS, MICHAEL G. · 2006 to 2010
$1.4M
Novel Human Cancer Cell Isolation SystemR01CA130938 · NCI · JOHNS HOPKINS UNIVERSITY · PI ESHLEMAN, JAMES R. · 2008 to 2011
$1.2M
CIHRNCI NIH HHS R01 CA120432NCI NIH HHS R01CA120432NCI NIH HHS R01 CA130938
6 · The paper itself

Abstract

Patients with biliary tract carcinoma have a poor prognosis. Early detection efforts are urgently needed to ameliorate the dismal prognosis for these patients. Mutations of the KRAS2 gene are one of the most common genetic aberrations in this cancer. In this study, we used LigAmp, an ultrasensitive technology for detecting point mutations, to analyze KRAS2 mutations in patients with a variety of neoplastic and non-neoplastic pancreatobiliary diseases. DNA was isolated from 64 samples, including 44 bile samples and 20 serum samples. Oligonucleotides specific for KRAS2 G35A (GAT, G12D), G35T (GTT, G12V), and G34A (AGT, G12S) mutations were used. KRAS2 mutations were detected in 14 of 16 (87.5%) neoplastic bile samples and in 9 of 28 (32.1%) non-neoplastic bile samples. However, the mutation levels were significantly lower in the non-neoplastic bile (median = 0.4%) compared with those in the neoplastic bile (median = 5.1%). KRAS2 mutations were also detected in 9 of 11 (81.8%) serum samples from patients with biliary tract carcinoma, which was further confirmed by cloning BstN1-refractory PCR products and DNA sequencing. However, KRAS2 mutations were not present in the sera from eight patients with benign pancreatobiliary diseases. These data demonstrate that KRAS2 mutations are detectable in both bile and serum using LigAmp. This technology has the potential for early biliary tract carcinoma detection and possibly for residual disease monitoring post-therapy.

Indexed as

BileBiliary Tract NeoplasmsCarcinomaDNA Mutational AnalysisHumansMutationProto-Oncogene ProteinsProto-Oncogene Proteins p21(ras)ras ProteinsReproducibility of ResultsKRAS protein, humanProto-Oncogene ProteinsProto-Oncogene Proteins p21(ras)ras Proteins

Identifiers

PMID19815696
PMCPMC2765758
OpenAlexW2100548519

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.