Evidence map›Paper›PMID 19815620›Full record

ArticleHuman molecular genetics2010

Impaired replication dynamics at the FRA3B common fragile site.

Aparna Palakodeti, Isabelle Lucas, Yanwen Jiang, David J Young, Anthony A Fernald, Theodore Karrison, Michelle M Le Beau

Abstract read
In one paragraph

Article in Human molecular genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 36 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Aparna PalakodetiDepartment of Medicine, Section of Hematology/Oncology, The University of Chicago, Chicago, IL 60637, USA.
Isabelle Lucas
Yanwen Jiang
David J Young
Anthony A Fernald
Theodore Karrison
Michelle M Le Beau
University of Chicago · US

Funding

Ruth L. Kirschstein National Research Service Award (NRSA) Institutional Research Training Grant (Parent T32)T32HD007009 · NICHD · UNIVERSITY OF CHICAGO · PI NANCY B SCHWARTZ · 1985 to 2026
$13.0M
MOLECULAR ANALYSIS OF CHROMOSOMAL FRAGILE SITESR01CA041644 · NCI · UNIVERSITY OF CHICAGO · PI LE BEAU, MICHELLE M · 1986 to 2005
$2.1M
NCI NIH HHS CA41644NCI NIH HHS R01 CA041644NICHD NIH HHS T32 HD007009NICHD NIH HHS T32 HD07009
6 · The paper itself

Abstract

Chromosomal common fragile sites (CFSs) are genetically unstable regions of the genome that are induced by conditions that impair DNA replication. In this report, we show that treatment with the DNA polymerase inhibitor, aphidicolin (APH), slows the replication rate throughout S phase. To investigate the unusual sensitivity of CFSs to APH-induced replication stress, we examined replication dynamics within a 50 kb region of the most frequently expressed CFS, FRA3B. We mapped four origins of replication, ori 1-4, using two independent methods. In untreated cells, we detected significantly less newly replicated DNA at FRA3B ori 1-3, as compared with three control origins located within non-fragile regions (NCFSs). In APH-treated cells, all FRA3B and control origins tested were active; however, there was a significant increase of nascent strand DNA at the control origins and, to a lesser extent, at the FRA3B ori 1-3. On the basis of these observations and the theoretical modeling of the nascent strand abundance assay developed in this study, we hypothesize that CFS origins may be less efficient, and that APH treatment slows replication fork movement near these origins to a greater extent, resulting in impaired DNA replication and, ultimately, leading to the genetic instability characteristic of CFSs.

Indexed as

Acid Anhydride HydrolasesAphidicolinBis(5'-adenosyl)triphosphataseChromosome Fragile SitesDNADNA ReplicationNeoplasm ProteinsReplication OriginReverse Transcriptase Polymerase Chain ReactionS PhaseTime FactorsAcid Anhydride HydrolasesAphidicolinBis(5'-adenosyl)triphosphataseDNANeoplasm Proteins

Identifiers

PMID19815620
PMCPMC2800779
OpenAlexW2111999017

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.