Evidence map›Paper›PMID 19813057›Full record

ArticleMarine biotechnology (New York, N.Y.)2010

Silicatein genes in spicule-forming and nonspicule-forming Pacific demosponges.

Valeri B Kozhemyako, Galina N Veremeichik, Yuri N Shkryl, Svetlana N Kovalchuk, Vladimir B Krasokhin, Valeri A Rasskazov, Yuri N Zhuravlev, Victor P Bulgakov, Yuri N Kulchin

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Article in Marine biotechnology (New York, N.Y.), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. The genome of the reef-building glass spongeRoyal Society open science · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. Article
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  10. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Valeri B KozhemyakoPacific Institute of Bioorganic Chemistry, Far East Branch of Russian Academy of Sciences, Vladivostok, Russia. kozhemyako@hotmail.com
Galina N Veremeichik
Yuri N Shkryl
Svetlana N Kovalchuk
Vladimir B Krasokhin
Valeri A Rasskazov
Yuri N Zhuravlev
Victor P Bulgakov
Yuri N Kulchin

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Silicatein genes are known to be involved in siliceous spicule formation in marine sponges. Proteins encoded by these genes, silicateins, were recently proposed for nanobiotechnological applications. We studied silicatein genes of marine sponges Latrunculia oparinae collected in the west Pacific region, shelf of Kuril Islands. Five silicatein genes, LoSilA1, LoSilA1a, LoSilA2, and LoSilA3 (silicatein-alpha group), LoSilB (silicatein-beta group), and one cathepsin gene, LoCath, were isolated from the sponge L. oparinae for the first time. The deduced amino acid sequence of L. oparinae silicateins showed high-sequence identity with silicateins described previously. LoCath contains the catalytic triad of amino acid residues Cys-His-Asn characteristic for cathepsins as well as motifs typical for silicateins. A phylogenetic analysis places LoCath between sponge silicateins-beta and L-cathepsins suggesting that the LoCath gene represents an intermediate form between silicatein and cathepsin genes. Additionally, we identified, for the first time, silicatein genes (AcSilA and AcSilB) in nonspicule-forming marine sponge, Acsmall a, Cyrillicnthodendrilla sp. The results suggest that silicateins could participate also in the function(s) unrelated to spiculogenesis.

Indexed as

Amino Acid SequenceAnimalsCathepsinsGene Expression RegulationMolecular Sequence DataPacific OceanPhylogenyPoriferaSequence AlignmentSequence Homology, Amino AcidCathepsinssilicatein alpha

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.