Evidence map›Paper›PMID 19812203›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2009

The gene history of zebrafish tlr4a and tlr4b is predictive of their divergent functions.

Con Sullivan, Jeremy Charette, Julian Catchen, Christopher R Lage, Gregory Giasson, John H Postlethwait, Paul J Millard, Carol H Kim

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 158 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. iMeta · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. An EngineeredInternational journal of molecular sciences · 2021
    Article
  18. Identification and Characterization of Zebrafish Tlr4 Coreceptor Md-2.Journal of immunology (Baltimore, Md. : 1950) · 2021
    Article
  19. Review
  20. Review

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Con SullivanDepartment of Biochemistry, Microbiology, and Molecular Biology, University of Maine, Orono, ME 04469, USA.
Jeremy Charette
Julian Catchen
Christopher R Lage
Gregory Giasson
John H Postlethwait
Paul J Millard
Carol H Kim
Institute of Molecular Biology · BGScience and Technology on Surface Physics and Chemistry Laboratory · CNUniversity of Oregon · US

Funding

GENOMIC ANALYSIS OF ZEBRAFISH DEVELOPMENTR01RR010715 · NCRR · UNIVERSITY OF OREGON · PI POSTLETHWAIT, JOHN HARVEY · 1995 to 2006
$3.1M
Functional Role of Zebrafish TLR ProteinsR01GM087308 · NIGMS · UNIVERSITY OF MAINE ORONO · PI KIM, CAROL H. · 2008 to 2012
$1.5M
Toll Signaling Pathway in Zebrafish KnockdownsR15AI049237 · NIAID · UNIVERSITY OF MAINE ORONO · PI KIM, CAROL H. · 2001 to 2003
$294k
Characterization of a Zebrafish TLR Adaptor ProteinR15AI065509 · NIAID · UNIVERSITY OF MAINE ORONO · PI MILLARD, PAUL JEFFREY · 2006 to 2006
$223k
NCRR NIH HHS R01 RR010715NCRR NIH HHS R01 RR10715NIAID NIH HHS R15 AI049237NIAID NIH HHS R15AI049237-02NIAID NIH HHS R15 AI065509NIAID NIH HHS R15AI065509-01NIGMS NIH HHS R01 GM087308
6 · The paper itself

Abstract

Mammalian immune responses to LPS exposure are typified by the robust induction of NF-kappaB and IFN-beta responses largely mediated by TLR4 signal transduction pathways. In contrast to mammals, Tlr4 signal transduction pathways in nontetrapods are not well understood. Comprehensive syntenic and phylogenetic analyses support our hypothesis that zebrafish tlr4a and tlr4b genes are paralogous rather than orthologous to human TLR4. Furthermore, we provide evidence to support our assertion that the in vivo responsiveness of zebrafish to LPS exposure is not mediated by Tlr4a and Tlr4b paralogs because they fail to respond to LPS stimulation in vitro. Zebrafish Tlr4a and Tlr4b paralogs were also unresponsive to heat-killed Escherichia coli and Legionella pneumophila. Using chimeric molecules in which portions of the zebrafish Tlr4 proteins were fused to portions of the mouse TLR4 protein, we show that the lack of responsiveness to LPS was most likely due to the inability of the extracellular portions of zebrafish Tlr4a and Tlr4b to recognize the molecule, rather than to changes in their capacities to transduce signals through their Toll/IL-1 receptor (TIR) domains. Taken together, these findings strongly support the notion that zebrafish tlr4a and tlr4b paralogs have evolved to provide alternative ligand specificities to the Tlr immune defense system in this species. These data demonstrate that intensive examination of gene histories when describing the Tlr proteins of basally diverging vertebrates is required to obtain fuller appreciation of the evolution of their function. These studies provide the first evidence for the functional evolution of a novel Tlr.

Indexed as

Amino Acid SequenceAnimalsCell LineCell Line, TumorCells, CulturedChickensHumansLigandsLipopolysaccharidesMiceMolecular Sequence DataPhylogenyProtein IsoformsSequence Homology, Amino AcidToll-Like Receptor 4ZebrafishLigandsLipopolysaccharidesProtein Isoformstlr4ba protein, zebrafishToll-Like Receptor 4Zebrafish Proteins

Identifiers

PMID19812203
PMCPMC2819326
OpenAlexW1924634855

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.