Evidence map›Paper›PMID 19808662›Full record

ArticleThe Journal of biological chemistry2009

Evidence that nucleosomes inhibit mismatch repair in eukaryotic cells.

Feng Li, Lei Tian, Liya Gu, Guo-Min Li

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
  2. Article
  3. DNA Repair in Nucleosomes: Insights from Histone Modifications and Mutants.International journal of molecular sciences · 2024
    Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Mutperiod: Analysis of periodic mutation rates in nucleosomes.Computational and structural biotechnology journal · 2021
    Article
  9. Review
  10. Dynamic human MutSα-MutLα complexes compact mismatched DNA.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Feng LiGraduate Center for Toxicology, Markey Cancer Center, University of Kentucky College of Medicine, Lexington, Kentucky 40536, USA.
Lei Tian
Liya Gu
Guo-Min Li
University of Kentucky · US

Funding

Dissection and Reconstitution of Human Mismatch RepairR01GM072756 · NIGMS · UNIVERSITY OF KENTUCKY · PI LI, GUO-MIN · 2006 to 2009
$1.0M
NIGMS NIH HHS GM072756NIGMS NIH HHS R01 GM072756
6 · The paper itself

Abstract

The influence of chromatin structure on DNA metabolic processes, including DNA replication and repair, has been a matter of intensive studies in recent years. Although the human mismatch repair (MMR) reaction has been reconstituted using purified proteins, the influence of chromatin structure on human MMR is unknown. This study examines the interaction between human MutSalpha and a mismatch located within a nucleosome or between two nucleosomes. The results show that, whereas MutSalpha specifically recognizes both types of nucleosomal heteroduplexes, the protein bound the mismatch within a nucleosome with much lower efficiency than a naked heteroduplex or a heterology free of histone proteins but between two nucleosomes. Additionally, MutSalpha displays reduced ATPase- and ADP-binding activity when interacting with nucleosomal heteroduplexes. Interestingly, nucleosomes block ATP-induced MutSalpha sliding along the DNA helix when the mismatch is in between two nucleosomes. These findings suggest that nucleosomes may inhibit MMR in eukaryotic cells. The implications of these findings for our understanding of eukaryotic MMR are discussed.

Indexed as

DNA Mismatch RepairAdenosine TriphosphatasesAdenosine TriphosphateBase SequenceElectrophoresis, Agar GelElectrophoresis, Polyacrylamide GelElectrophoretic Mobility Shift AssayEukaryotic CellsHistonesHumansMutS DNA Mismatch-Binding ProteinNucleic Acid HeteroduplexesNucleosomesOligonucleotidesProtein BindingAdenosine TriphosphatasesAdenosine TriphosphateHistonesMutS DNA Mismatch-Binding ProteinNucleic Acid HeteroduplexesNucleosomesOligonucleotides

Identifiers

PMID19808662
PMCPMC2785146
OpenAlexW1998006828

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.