Evidence map›Paper›PMID 19807078›Full record

ArticleJournal of the American Chemical Society2009

An electrochemical sensor for single nucleotide polymorphism detection in serum based on a triple-stem DNA probe.

Yi Xiao, Xinhui Lou, Takanori Uzawa, Kory J I Plakos, Kevin W Plaxco, H Tom Soh

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Rationally Designed DNA-Based Scaffolds and Switching Probes for Protein Sensing.Advances in biochemical engineering/biotechnology · 2024
    Review
  3. Electrochemical Impedimetric Study of Non-Watson-Crick Base Pairs of DNA.Analytical sciences : the international journal of the Japan Society for Analytical Chemistry · 2021
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Highly specific SNP detection using 2D graphene electronics and DNA strand displacement.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  10. Article
  11. DNA electrochemistry with tethered methylene blue.Langmuir : the ACS journal of surfaces and colloids · 2012
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Electrochemical sensors.Analytical chemistry · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yi XiaoMaterials Department, University of California, Santa Barbara, California 93106, USA. yixiao@physics.ucsb.edu
Xinhui Lou
Takanori Uzawa
Kory J I Plakos
Kevin W Plaxco
H Tom Soh

Funding

Strain Specific Detection of Influenza at the Point-of-CareR01EB009764 · NIBIB · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI SOH, HYONGSOK TOM · 2009 to 2012
$1.5M
Micromagnetic Aptamer PCR System for Ultrasensitive Multiplexed Protein DetectionR21EB009518 · NIBIB · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI SOH, HYONGSOK TOM · 2009 to 2010
$328k
NIBIB NIH HHS R01 EB009764NIBIB NIH HHS R21 EB009518
6 · The paper itself

Abstract

We report here an electrochemical approach that offers, for the first time, single-step, room-temperature single nucleotide polymorphism (SNP) detection directly in complex samples (such as blood serum) without the need for target modification, postwashing, or the addition of exogenous reagents. This sensor, which is sensitive, stable, and reusable, is comprised of a single, self-complementary, methylene blue-labeled DNA probe possessing a triple-stem structure. This probe takes advantage of the large thermodynamic changes in enthalpy and entropy that result from major conformational rearrangements that occur upon binding a perfectly matched target, resulting in a large-scale change in the faradaic current. As a result, the discrimination capabilities of this sensor greatly exceed those of earlier single- and double-stem electrochemical sensors and support rapid (minutes), single-step, reagentless, room-temperature detection of single nucleotide substitutions. To elucidate the theoretical basis of the sensor's selectivity, we present a comparative thermodynamic analysis among single-, double-, and triple-stem probes.

Indexed as

Polymorphism, Single NucleotideAnimalsBiosensing TechniquesCattleDNADNA ProbesElectrochemical TechniquesDNADNA Probes

Identifiers

PMID19807078
PMCPMC2783950

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.