Evidence map›Paper›PMID 19805276›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Intramembrane proteolytic cleavage of a membrane-tethered transcription factor by a metalloprotease depends on ATP.

Ruanbao Zhou, Christina Cusumano, Dexin Sui, R Michael Garavito, Lee Kroos

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 35 citations in OpenAlex.

  1. Inhibitory proteins ofJournal of bacteriology · 2025
    Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Interaction of intramembrane metalloprotease SpoIVFB with substrate Pro-σProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Regulated proteolysis in bacterial development.FEMS microbiology reviews · 2014
    Review
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Recent progress in Bacillus subtilis sporulation.FEMS microbiology reviews · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ruanbao ZhouDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA.
Christina Cusumano
Dexin Sui
R Michael Garavito
Lee Kroos
Michigan State University · US

Funding

SWITCH GOVERNING BACILLUS MOTHER CELL GENE EXPRESSIONR01GM043585 · NIGMS · MICHIGAN STATE UNIVERSITY · PI KROOS, LEE R · 1995 to 2021
$4.8M
TEMPORAL AND SPATIAL GENE REGULATION--BACILLUS SUBTILISR29GM043585 · NIGMS · MICHIGAN STATE UNIVERSITY · PI KROOS, LEE R · 1990 to 1994
–
NIGMS NIH HHS GM43585NIGMS NIH HHS R01 GM043585
6 · The paper itself

Abstract

Regulated intramembrane proteolysis (RIP) involves cleavage of a transmembrane segment of a protein. RIP governs diverse processes in a wide variety of organisms and is carried out by different types of intramembrane proteases (IPs), including a large family of metalloproteases. The Bacillus subtilis SpoIVFB protein is a putative metalloprotease that cleaves membrane-tethered Pro-sigma(K), releasing sigma(K) to direct transcription of genes necessary for spore formation. By attaching an extra transmembrane segment to the N terminus of SpoIVFB, expression in E. coli was improved more than 100-fold, facilitating purification and demonstration of metalloprotease activity, which accurately cleaved purified Pro-sigma(K). Uniquely for IPs examined so far, SpoIVFB activity requires ATP, which binds to the C-terminal cystathionine-beta-synthase (CBS) domain of SpoIVFB. Deleting just 10 residues from the C-terminal end of SpoIVFB nearly eliminated cleavage of coexpressed Pro-sigma(K) in E. coli. The CBS domain of SpoIVFB was shown to interact with Pro-sigma(K) and ATP changed the interaction, suggesting that ATP regulates substrate access to the active site and renders cleavage sensitive to the cellular energy level, which may be a general feature of CBS-domain-containing IPs. Incorporation of SpoIVFB into preformed liposomes stimulated its ability to cleave Pro-sigma(K). Cleavage depended on ATP and the correct peptide bond was shown to be cleaved using a rapid and sensitive mass spectrometry assay. A system for biochemical studies of RIP by a metalloprotease in a membrane environment has been established using methods that might be applicable to other IPs.

Indexed as

Adenosine TriphosphateBacterial ProteinsCatalytic DomainElectrophoresis, Polyacrylamide GelEndopeptidasesHydrolysisImmunoblottingMass SpectrometryMembrane ProteinsModels, BiologicalMutationProtein PrecursorsSignal TransductionTranscription FactorsAdenosine TriphosphateBacterial ProteinsEndopeptidasesMembrane ProteinsProtein Precursorssigma KspoIVFB protein, Bacillus subtilisTranscription Factors

Identifiers

PMID19805276
PMCPMC2752518
OpenAlexW2026336846

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.