Evidence map›Paper›PMID 19805152›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein.

Matti Kankainen, Lars Paulin, Soile Tynkkynen, Ingemar von Ossowski, Justus Reunanen, Pasi Partanen, Reetta Satokari, Satu Vesterlund, Antoni P A Hendrickx, Sarah Lebeer and 20 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 323 papers.

0numbers the graph read from it
0cells of the map it votes in
323citing papers in PubMed
73.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

323 citing papers in PubMed, 717 citations in OpenAlex.

  1. Trial
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  6. Nutrient control enables metabolic reconstruction ofbioRxiv : the preprint server for biology · 2026
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  7. Live and heat-treatediScience · 2026
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  8. Article
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  10. Foods (Basel, Switzerland) · 2026
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  14. Review
  15. Review
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  17. Pharmaceuticals (Basel, Switzerland) · 2025
    Article
  18. Article
  19. eLife · 2025
    Article
  20. Influence of the pili ofApplied and environmental microbiology · 2025
    Article

263 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 7 institutions in 5 countries.

Matti KankainenInstitute of Biotechnology, University of Helsinki, P.O. Box 56, FIN-00014, Helsinki, Finland. matti.kankainen@helsinki.fi
Lars Paulin
Soile Tynkkynen
Ingemar von Ossowski
Justus Reunanen
Pasi Partanen
Reetta Satokari
Satu Vesterlund
Antoni P A Hendrickx
Sarah Lebeer
Sigrid C J De Keersmaecker
Jos Vanderleyden
Tuula Hämäläinen
Suvi Laukkanen
Noora Salovuori
Jarmo Ritari
Edward Alatalo
Riitta Korpela
Tiina Mattila-Sandholm
Anna Lassig
Katja Hatakka
Katri T Kinnunen
Heli Karjalainen
Maija Saxelin
Kati Laakso
Anu Surakka
Airi Palva
Tuomas Salusjärvi
Petri Auvinen
Willem M de Vos
Valio (Finland) · FIUniversity of Helsinki · FICzech Academy of Sciences, Institute of Biotechnology · CZKU Leuven · BEUniversity of Turku · FIUniversity Medical Center Utrecht · NLWageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To unravel the biological function of the widely used probiotic bacterium Lactobacillus rhamnosus GG, we compared its 3.0-Mbp genome sequence with the similarly sized genome of L. rhamnosus LC705, an adjunct starter culture exhibiting reduced binding to mucus. Both genomes demonstrated high sequence identity and synteny. However, for both strains, genomic islands, 5 in GG and 4 in LC705, punctuated the colinearity. A significant number of strain-specific genes were predicted in these islands (80 in GG and 72 in LC705). The GG-specific islands included genes coding for bacteriophage components, sugar metabolism and transport, and exopolysaccharide biosynthesis. One island only found in L. rhamnosus GG contained genes for 3 secreted LPXTG-like pilins (spaCBA) and a pilin-dedicated sortase. Using anti-SpaC antibodies, the physical presence of cell wall-bound pili was confirmed by immunoblotting. Immunogold electron microscopy showed that the SpaC pilin is located at the pilus tip but also sporadically throughout the structure. Moreover, the adherence of strain GG to human intestinal mucus was blocked by SpaC antiserum and abolished in a mutant carrying an inactivated spaC gene. Similarly, binding to mucus was demonstrated for the purified SpaC protein. We conclude that the presence of SpaC is essential for the mucus interaction of L. rhamnosus GG and likely explains its ability to persist in the human intestinal tract longer than LC705 during an intervention trial. The presence of mucus-binding pili on the surface of a nonpathogenic Gram-positive bacterial strain reveals a previously undescribed mechanism for the interaction of selected probiotic lactobacilli with host tissues.

Indexed as

Bacterial AdhesionBacterial ProteinsCloning, MolecularDNA, BacterialFimbriae, BacterialFimbriae ProteinsGenomicsHumansImmunoblottingIntestinal MucosaLacticaseibacillus rhamnosusMembrane ProteinsMicroscopy, ImmunoelectronModels, BiologicalMolecular Sequence DataMucusBacterial ProteinsDNA, BacterialFimbriae ProteinsMembrane ProteinsSpaC protein, bacteria

Identifiers

PMID19805152
PMCPMC2746127
OpenAlexW2084937356

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.