Evidence map›Paper›PMID 19805132›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Common variants on chromosome 2 and risk of primary open-angle glaucoma in the Afro-Caribbean population of Barbados.

Xiaodong Jiao, Zhenglin Yang, Xian Yang, Yuhong Chen, Zongzhong Tong, Chao Zhao, Jiexi Zeng, Haoyu Chen, Daniel Gibbs, Xufang Sun and 16 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
8.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 49 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Primary Open-Angle Glaucoma Genetics in African Americans.Current genetic medicine reports · 2017
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Genetics of primary open angle glaucoma.Japanese journal of ophthalmology · 2014
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Racial differences in ocular oxidative metabolism: implications for ocular disease.Archives of ophthalmology (Chicago, Ill. : 1960) · 2011
    Article
  16. Article
  17. Article
  18. Complex genetic mechanisms in glaucoma: an overview.Indian journal of ophthalmology · 2011
    Review
  19. Article
  20. Glaucoma: genes, phenotypes, and new directions for therapy.The Journal of clinical investigation · 2010
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors at 9 institutions in 5 countries.

Xiaodong JiaoOphthalmic Genetics and Visual Function Branch, National Eye Institute, and Barbados Family Study Group, National Institutes of Health, Bethesda, MD 20892, USA.
Zhenglin Yang
Xian Yang
Yuhong Chen
Zongzhong Tong
Chao Zhao
Jiexi Zeng
Haoyu Chen
Daniel Gibbs
Xufang Sun
Bei Li
W Scott Wakins
Cynthia Meyer
Xiaolei Wang
Daniel Kasuga
Matthew Bedell
Erik Pearson
Robert N Weinreb
M Cristina Leske
Anselm Hennis
Andrew DeWan
Barbara Nemesure
Lynn B Jorde
Josephine Hoh
J Fielding Hejtmancik
Kang Zhang
University of California, San Diego · USUniversity of Utah · USEye Center · SAStony Brook University · USYale University · USMinistry of Health · BBNational Eye Institute · USNational Institutes of Health · USQingdao University · CN

Funding

Inherited Ocular DiseasesZIAEY000272 · NEI · NATIONAL EYE INSTITUTE · PI HEJTMANCIK, JAMES F. · 2009 to 2025
$27.0M
6 · The paper itself

Abstract

Primary open-angle glaucoma (POAG) is the second leading cause of blindness worldwide. Although a number of genetic loci have shown association or genetic linkage to monogenic forms of POAG, the identified genes and loci do not appear to have a major role in the common POAG phenotype. We seek to identify genetic loci that appear to be major risk factors for POAG in the Afro-Caribbean population of Barbados, West Indies. We performed linkage analyses in 146 multiplex families ascertained through the Barbados Family Study of Glaucoma (BFSG) and identified a strong linkage signal on chromosome 2p (logarithm of odds score = 6.64 at = 0 with marker D2S2156). We subsequently performed case-control analyses using unrelated affected individuals and unaffected controls. A set of SNPs on chromosome 2p was evaluated in two independent groups of BFSG participants, a discovery group (130 POAG cases, 65 controls) and a replication group (122 POAG cases, 65 controls), and a strong association was identified with POAG and rs12994401 in both groups (P < 3.34 E-09 and P < 1.21E-12, respectively). The associated SNPs form a common disease haplotype. In summary, we have identified a locus with a major impact on susceptibility to the common POAG phenotype in an Afro-Caribbean population in Barbados. Our approach illustrates the merit of using an isolated population enriched with common disease variants as an efficient method to identify genetic underpinning of POAG.

Indexed as

Polymorphism, Single NucleotideBarbadosBlack PeopleCase-Control StudiesChromosomes, Human, Pair 2Family HealthFemaleGene FrequencyGenetic VariationGenotypeGlaucoma, Open-AngleHaplotypesHumansMaleRisk Factors

Identifiers

PMID19805132
PMCPMC2761374
OpenAlexW2050405284

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.