Evidence map›Paper›PMID 19802714›Full record

ArticleExtremophiles : life under extreme conditions2010

"Hot standards" for the thermoacidophilic archaeon Sulfolobus solfataricus.

Melanie Zaparty, Dominik Esser, Susanne Gertig, Patrick Haferkamp, Theresa Kouril, Andrea Manica, Trong K Pham, Julia Reimann, Kerstin Schreiber, Pawel Sierocinski and 12 more

Abstract read
In one paragraph

Article in Extremophiles : life under extreme conditions, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. Membrane proteome of the thermoalkaliphileFrontiers in microbiology · 2023
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Frontiers in nutrition · 2020
    Article
  10. Article
  11. The Impact of Pyroglutamate:Archaea (Vancouver, B.C.) · 2019
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Melanie ZapartyBiofilm Centre, Molecular Enzyme Technology and Biochemistry, University of Duisburg-Essen, Lotharstrasse, 47057 Duisburg, Germany. melanie.zaparty@uni-due.de
Dominik Esser
Susanne Gertig
Patrick Haferkamp
Theresa Kouril
Andrea Manica
Trong K Pham
Julia Reimann
Kerstin Schreiber
Pawel Sierocinski
Daniela Teichmann
Marleen van Wolferen
Mathias von Jan
Patricia Wieloch
Sonja V Albers
Arnold J M Driessen
Hans-Peter Klenk
Christa Schleper
Dietmar Schomburg
John van der Oost
Phillip C Wright
Bettina Siebers

Funding

Biotechnology and Biological Sciences Research Council BB/F003420/1
6 · The paper itself

Abstract

Within the archaea, the thermoacidophilic crenarchaeote Sulfolobus solfataricus has become an important model organism for physiology and biochemistry, comparative and functional genomics, as well as, more recently also for systems biology approaches. Within the Sulfolobus Systems Biology ("SulfoSYS")-project the effect of changing growth temperatures on a metabolic network is investigated at the systems level by integrating genomic, transcriptomic, proteomic, metabolomic and enzymatic information for production of a silicon cell-model. The network under investigation is the central carbohydrate metabolism. The generation of high-quality quantitative data, which is critical for the investigation of biological systems and the successful integration of the different datasets, derived for example from high-throughput approaches (e.g., transcriptome or proteome analyses), requires the application and compliance of uniform standard protocols, e.g., for growth and handling of the organism as well as the "-omics" approaches. Here, we report on the establishment and implementation of standard operating procedures for the different wet-lab and in silico techniques that are applied within the SulfoSYS-project and that we believe can be useful for future projects on Sulfolobus or (hyper)thermophiles in general. Beside established techniques, it includes new methodologies like strain surveillance, the improved identification of membrane proteins and the application of crenarchaeal metabolomics.

Indexed as

GenomicsSulfolobus solfataricus

Identifiers

PMID19802714
PMCPMC2797409

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.