Evidence map›Paper›PMID 19801539›Full record

ArticleThe Journal of biological chemistry2009

An RNA recognition motif mediates the nucleocytoplasmic transport of a trypanosome RNA-binding protein.

Alejandro Cassola, Alberto C Frasch

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 48 citations in OpenAlex.

  1. Modulation of Virulence Factors duringPathogens (Basel, Switzerland) · 2022
    Review
  2. Article
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  7. Comparative genomics of drug resistance in Trypanosoma brucei rhodesiense.Cellular and molecular life sciences : CMLS · 2016
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Alejandro CassolaInstituto de Investigaciones Biotecnológicas-Instituto Tecnológico Chascomús, UNSAM-CONICET, (1650) San Martín, Provincia de Buenos Aires, Argentina.
Alberto C Frasch
National University of General San Martín · AR

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

RNA-binding proteins (RBPs) and RNA metabolism are considered to be important for modulating gene expression in trypanosomes, because these protozoan parasites mainly rely on post-transcriptional mechanisms to regulate protein levels. Previously, we have identified TcUBP1, a single RNA recognition motif (RRM)-type RBP from Trypanosoma cruzi. TcUBP1 is a cytoplasmic protein with roles in stabilization/degradation of mRNAs and in the protection of transcripts through their recruitment into cytoplasmic granules. We now show that TcUBP1, and the closely related protein TcUBP2, can be found in small amounts in the nucleus under normal conditions, and are able to accumulate in the nucleus under arsenite stress. The kinetics of nuclear accumulation, and export to the cytoplasm, are consistent with the shuttling of TcUBP1 between the nucleus and the cytoplasm. The sequence required for TcUBP1 nuclear accumulation was narrowed to the RRM, and point mutations affecting RNA binding abolished nuclear import. This RRM was also shown to be efficiently exported from the nucleus in unstressed parasites, a property that relied on the binding to RNA. TcUBP1 nuclear accumulation was dependent on active transcription, and colocalized with transcripts in the nucleus, suggesting nuclear binding of the mRNA. We propose that TcUBP1 could be linking the mRNA metabolism at both sides of the nuclear pore complex, using the RRM as a nuclear localization signal, and being exported as a cargo on mRNA.

Indexed as

Active Transport, Cell NucleusAmino Acid SequenceAnimalsArsenitesBase SequenceCell NucleusModels, MolecularMolecular Sequence DataNuclear Localization SignalsNuclear PoreOxidative StressProtein ConformationProtozoan ProteinsRecombinant Fusion ProteinsRNA-Binding ProteinsRNA, MessengerarseniteArsenitesNuclear Localization SignalsProtozoan ProteinsRecombinant Fusion ProteinsRNA-Binding ProteinsRNA, MessengerUBP1 protein, Trypanosoma cruzi

Identifiers

PMID19801539
PMCPMC2787363
OpenAlexW2073583408

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.