Evidence map›Paper›PMID 19800577›Full record

ArticleCancer cell2009

Functional identification of tumor-suppressor genes through an in vivo RNA interference screen in a mouse lymphoma model.

Anka Bric, Cornelius Miething, Carl Uli Bialucha, Claudio Scuoppo, Lars Zender, Alexander Krasnitz, Zhenyu Xuan, Johannes Zuber, Michael Wigler, James Hicks and 5 more

Open access · bronzeAbstract readValidation Study
In one paragraph

Article in Cancer cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed, 165 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Exploring liver cancer biology through functional genetic screens.Nature reviews. Gastroenterology & hepatology · 2021
    Review
  5. Review
  6. Article
  7. Frontiers in aging · 2021
    Review
  8. Review
  9. Article
  10. Review
  11. Review
  12. Frontiers in immunology · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Potential Applications of NRF2 Inhibitors in Cancer Therapy.Oxidative medicine and cellular longevity · 2019
    Review
  17. Review
  18. Article
  19. Review
  20. Next-GenerationFrontiers in oncology · 2018
    Review

40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Anka BricCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Cornelius Miething
Carl Uli Bialucha
Claudio Scuoppo
Lars Zender
Alexander Krasnitz
Zhenyu Xuan
Johannes Zuber
Michael Wigler
James Hicks
Richard W McCombie
Michael T Hemann
Gregory J Hannon
Scott Powers
Scott W Lowe
Cold Spring Harbor Laboratory · USHoward Hughes Medical Institute · USMassachusetts Institute of Technology · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
VIRAL TRANSACTIVATIONP01CA013106 · NCI · COLD SPRING HARBOR LABORATORY · PI William Richard McCombie · 1985 to 2026
$116.8M
Making hypomorphic tumor supressors in vivo using RNAiU01CA105388 · NCI · COLD SPRING HARBOR LABORATORY · PI LOWE, SCOTT W. · 2004 to 2013
$8.8M
Howard Hughes Medical InstituteNCI NIH HHS CA105388NCI NIH HHS CA13106NCI NIH HHS P01 CA013106NCI NIH HHS P30 CA008748NCI NIH HHS U01 CA105388
6 · The paper itself

Abstract

Short hairpin RNAs (shRNAs) capable of stably suppressing gene function by RNA interference (RNAi) can mimic tumor-suppressor-gene loss in mice. By selecting for shRNAs capable of accelerating lymphomagenesis in a well-characterized mouse lymphoma model, we identified over ten candidate tumor suppressors, including Sfrp1, Numb, Mek1, and Angiopoietin 2. Several components of the DNA damage response machinery were also identified, including Rad17, which acts as a haploinsufficient tumor suppressor that responds to oncogenic stress and whose loss is associated with poor prognosis in human patients. Our results emphasize the utility of in vivo RNAi screens, identify and validate a diverse set of tumor suppressors, and have therapeutic implications.

Indexed as

Gene Expression Regulation, NeoplasticGenes, Tumor SuppressorRNA InterferenceAngiopoietin-2AnimalsCell Cycle ProteinsCell Line, TumorCell Transformation, NeoplasticDNA DamageGenes, mycGenes, p53Genetic TestingHematopoietic Stem CellsHematopoietic Stem Cell TransplantationHumansIntercellular Signaling Peptides and ProteinsAngiopoietin-2Cell Cycle ProteinsIntercellular Signaling Peptides and ProteinsMap2k1 protein, mouseMAP Kinase Kinase 1Membrane ProteinsNerve Tissue ProteinsNumb protein, mouseRad17 protein, humanSecreted Frizzled-Related ProteinsSfrp1 protein, mouse

Identifiers

PMID19800577
PMCPMC2829755
OpenAlexW2013689460

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.