Evidence map›Paper›PMID 19797082›Full record

ArticleMolecular and cellular biology2009

Structural basis of alternative DNA recognition by Maf transcription factors.

Hirofumi Kurokawa, Hozumi Motohashi, Shinji Sueno, Momoko Kimura, Hiroaki Takagawa, Yousuke Kanno, Masayuki Yamamoto, Toshiyuki Tanaka

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 86 citations in OpenAlex.

  1. Review
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  5. Role of Calmodulin in Neurodegeneration and Neuroprotection.Mini reviews in medicinal chemistry · 2025
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  15. Targeting NRF2 to treat cancer.Seminars in cancer biology · 2021
    Review
  16. Article
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  18. Article
  19. Motif grammar: The basis of the language of gene expression.Computational and structural biotechnology journal · 2020
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Hirofumi KurokawaInstitute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai 980-8577, Japan. hkuro@m.tains.tohoku.ac.jp
Hozumi Motohashi
Shinji Sueno
Momoko Kimura
Hiroaki Takagawa
Yousuke Kanno
Masayuki Yamamoto
Toshiyuki Tanaka
Tohoku University · JPUniversity of Tsukuba · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Maf transcription factors constitute a family of the basic region-leucine zipper (bZip) factors and recognize unusually long DNA motifs (13 or 14 bp), termed the Maf recognition element (MARE). The MARE harbors extended GC sequences on each side of its core motif, which is similar to TRE or CRE (7 or 8 bp) recognized by the AP1 and CREB/ATF families, respectively. To ascertain the structural basis governing the acquirement of such unique DNA recognition, we determined the crystal structure of the MafG-DNA complex. Each MafG monomer consists of three helices in which the carboxyl-terminal long helix organizes one DNA-contacting element and one coiled-coil dimer formation element. To our surprise, two well-conserved residues, Arg57 and Asn61 in the basic region, play critical roles in Maf-specific DNA recognition. These two residues show unique side-chain orientations and interact directly with the extended GC bases. Maf-specific residues in the amino-terminal and basic regions appear to indirectly stabilize MARE recognition through DNA backbone phosphate interactions. This study revealed an alternative DNA recognition mechanism of the bZip factors that bestows specific target gene profiles upon Maf homodimers or Maf-containing heterodimers.

Indexed as

Nucleic Acid ConformationProtein MultimerizationAmino Acid SequenceAnimalsBase SequenceBinding SitesCrystallography, X-RayDNAMafG Transcription FactorMiceModels, MolecularMolecular Sequence DataProtein BindingProtein Structure, QuaternaryProtein Structure, TertiaryRepressor ProteinsDNAMafg protein, mouseMafG Transcription FactorRepressor Proteins

Identifiers

PMID19797082
PMCPMC2786689
OpenAlexW2121513437

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.