Evidence map›Paper›PMID 19797078›Full record

ArticleThe Journal of cell biology2009

Ribosome stalk assembly requires the dual-specificity phosphatase Yvh1 for the exchange of Mrt4 with P0.

Kai-Yin Lo, Zhihua Li, Feng Wang, Edward M Marcotte, Arlen W Johnson

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 115 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. The multifaceted roles of ribosomal P complex in cancer.World journal of surgical oncology · 2025
    Review
  7. Ribophagy relies on Rpl12.Nature cell biology · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Archaea/eukaryote-specific ribosomal proteins - guardians of a complex structure.Computational and structural biotechnology journal · 2023
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article

13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Kai-Yin LoDepartment of Chemistry and Biochemistry, Section of Molecular Genetics and Microbiology, The Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA.
Zhihua Li
Feng Wang
Edward M Marcotte
Arlen W Johnson
Institut de Biologie Moléculaire et Cellulaire · FRThe University of Texas at Austin · USLaboratory of Molecular Genetics · PL

Funding

MRNA DEGRADATION AND TRANSLATION CONTROL IN YEASTR01GM053655 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI JOHNSON, ARLEN W · 1995 to 2017
$5.1M
Proteomics of widespread, reversible protein assemblies in aging and aggregationR01GM076536 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI MARCOTTE, EDWARD M · 2006 to 2014
$2.9M
Reconstructing the eukaryotic cell cycle gene networkR01GM067779 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI MARCOTTE, EDWARD M · 2004 to 2012
$2.1M
NIGMS NIH HHS GM06779NIGMS NIH HHS GM076536NIGMS NIH HHS GM53655NIGMS NIH HHS R01 GM053655NIGMS NIH HHS R01 GM067779NIGMS NIH HHS R01 GM076536
6 · The paper itself

Abstract

The ribosome stalk is essential for recruitment of translation factors. In yeast, P0 and Rpl12 correspond to bacterial L10 and L11 and form the stalk base of mature ribosomes, whereas Mrt4 is a nuclear paralogue of P0. In this study, we show that the dual-specificity phosphatase Yvh1 is required for the release of Mrt4 from the pre-60S subunits. Deletion of YVH1 leads to the persistence of Mrt4 on pre-60S subunits in the cytoplasm. A mutation in Mrt4 at the protein-RNA interface bypasses the requirement for Yvh1. Pre-60S subunits associated with Yvh1 contain Rpl12 but lack both Mrt4 and P0. These results suggest a linear series of events in which Yvh1 binds to the pre-60S subunit to displace Mrt4. Subsequently, P0 loads onto the subunit to assemble the mature stalk, and Yvh1 is released. The initial assembly of the ribosome with Mrt4 may provide functional compartmentalization of ribosome assembly in addition to the spatial separation afforded by the nuclear envelope.

Indexed as

Binding SitesDual-Specificity PhosphatasesGene Expression Regulation, FungalHeLa CellsHumansModels, MolecularMutationProtein ConformationRibosomal ProteinsRibosome Subunits, Large, EukaryoticRNA InterferenceSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTransfectiondual specificity phosphatase 12Dual-Specificity PhosphatasesMRT4 protein, S cerevisiaeRibosomal ProteinsRpl12 protein, S cerevisiaeRPP0 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsYVH1 protein, S cerevisiae

Identifiers

PMID19797078
PMCPMC2753163
OpenAlexW2152722934

What OpenQuestion holds

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LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.