Evidence map›Paper›PMID 19795834›Full record

ArticleBiochemistry2009

Characterization and structure of the manganese-responsive transcriptional regulator ScaR.

Kate E Stoll, William E Draper, Joseph I Kliegman, Misha V Golynskiy, Rhoda A T Brew-Appiah, Rebecca K Phillips, Hattie K Brown, Wendy A Breyer, Nicholas S Jakubovics, Howard F Jenkinson and 3 more

Abstract read
In one paragraph

Article in Biochemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Review
  3. AsJournal of the American Chemical Society · 2024
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  4. Structural Dynamics of theInternational journal of molecular sciences · 2023
    Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Stress Physiology of Lactic Acid Bacteria.Microbiology and molecular biology reviews : MMBR · 2016
    Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Structure solution of DNA-binding proteins and complexes with ARCIMBOLDO libraries.Acta crystallographica. Section D, Biological crystallography · 2014
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Kate E StollDepartment of Chemistry, Reed College, Portland, Oregon 97202, USA.
William E Draper
Joseph I Kliegman
Misha V Golynskiy
Rhoda A T Brew-Appiah
Rebecca K Phillips
Hattie K Brown
Wendy A Breyer
Nicholas S Jakubovics
Howard F Jenkinson
Richard G Brennan
Seth M Cohen
Arthur Glasfeld
Reed College · USUniversity of California, San Diego · USThe University of Texas MD Anderson Cancer Center · US

Funding

Zinc Homeostasis in Bacillus subtilisR01GM059323 · NIGMS · CORNELL UNIVERSITY ITHACA · PI HELMANN, JOHN D · 2000 to 2017
$4.5M
Studies of Manganese Binding Regulatory ProteinsR15GM069644 · NIGMS · REED COLLEGE · PI GLASFELD, ARTHUR · 2004 to 2007
$384k
NIGMS NIH HHS GM059323NIGMS NIH HHS GM069644NIGMS NIH HHS R01 GM059323NIGMS NIH HHS R15 GM069644
6 · The paper itself

Abstract

The streptococcal coaggregation regulator (ScaR) of Streptococcus gordonii is a manganese-dependent transcriptional regulator. When intracellular manganese concentrations become elevated, ScaR represses transcription of the scaCBA operon, which encodes a manganese uptake transporter. A member of the DtxR/MntR family of metalloregulators, ScaR shares sequence similarity with other family members, and many metal-binding residues are conserved. Here, we show that ScaR is an active dimer, with two dimers binding the 46 base pair scaC operator. Each ScaR subunit binds two manganese ions, and the protein is activated by a variety of other metal ions, including Cd(2+), Co(2+), and Ni(2+) but not Zn(2+). The crystal structure of apo-ScaR reveals a tertiary and quaternary structure similar to its homologue, the iron-responsive regulator DtxR. While each DtxR subunit binds a metal ion in two sites, labeled primary and ancillary, crystal structures of ScaR determined in the presence of Cd(2+) and Zn(2+) show only a single occupied metal-binding site that is novel to ScaR. The site analogous to the primary site in DtxR is unoccupied, and the ancillary site is absent from ScaR. Instead, metal ions bind to ScaR at a site labeled "secondary", which is composed of Glu80, Cys123, His125, and Asp160 and lies roughly 5 A away from where the ancillary site would be predicted to exist. This difference suggests that ScaR and its closely related homologues are activated by a mechanism distinct from that of either DtxR or MntR.

Indexed as

Amino Acid SequenceBacterial ProteinsCadmiumChromatography, GelCobaltCrystallography, X-RayDNAGene Expression Regulation, BacterialManganeseMolecular Sequence DataNickelProtein BindingProtein MultimerizationSequence Homology, Amino AcidStreptococcusUltracentrifugationBacterial ProteinsCadmiumCobaltDNAManganeseNickelZinc

Identifiers

PMID19795834
PMCPMC3586275
OpenAlexW2055411915

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.