Evidence map›Paper›PMID 19792041›Full record

ArticleChaos (Woodbury, N.Y.)2009

Spatiotemporal characteristics of calcium dynamics in astrocytes.

Minchul Kang, Hans G Othmer

Abstract read
In one paragraph

Article in Chaos (Woodbury, N.Y.), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Modeling traveling calcium waves in cellular structures.Journal of computational neuroscience · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Computational Models for Calcium-Mediated Astrocyte Functions.Frontiers in computational neuroscience · 2018
    Review
  12. A Compartmental Model to Investigate Local and Global CaFrontiers in computational neuroscience · 2018
    Article
  13. Article
  14. Review
  15. Article
  16. Computational models of neuron-astrocyte interaction in epilepsy.Frontiers in computational neuroscience · 2012
    Article
  17. Astrocytes display complex and localized calcium responses to single-neuron stimulation in the hippocampus.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2011
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Minchul KangDepartment of Molecular Physiology and Biophysics, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA.
Hans G Othmer

Funding

DYNAMIC PATTERN IN CHEMICALLY-REACTING SYSTEMSR01GM029123 · NIGMS · UNIVERSITY OF UTAH · PI OTHMER, HANS G · 1985 to 2018
$5.3M
Regulation of Microdomain Structure in Living CellsR01GM073846 · NIGMS · VANDERBILT UNIVERSITY · PI KENWORTHY, ANNE K · 2006 to 2010
$1.3M
NIGMS NIH HHS GM 29123NIGMS NIH HHS R01 GM029123NIGMS NIH HHS R01 GM073846
6 · The paper itself

Abstract

Although Ca(i)(2+) waves in networks of astrocytes in vivo are well documented, propagation in vivo is much more complex than in culture, and there is no consensus concerning the dominant roles of intercellular and extracellular messengers [inositol 1,4,5-trisphosphate (IP(3)) and adenosine-5'-triphosphate (ATP)] that mediate Ca(i)(2+) waves. Moreover, to date only simplified models that take very little account of the geometrical struture of the networks have been studied. Our aim in this paper is to develop a mathematical model based on realistic cellular morphology and network connectivity, and a computational framework for simulating the model, in order to address these issues. In the model, Ca(i) (2+) wave propagation through a network of astrocytes is driven by IP(3) diffusion between cells and ATP transport in the extracellular space. Numerical simulations of the model show that different kinetic and geometric assumptions give rise to differences in Ca(i)(2+) wave propagation patterns, as characterized by the velocity, propagation distance, time delay in propagation from one cell to another, and the evolution of Ca(2+) response patterns. The temporal Ca(i)(2+) response patterns in cells are different from one cell to another, and the Ca(i)(2+) response patterns evolve from one type to another as a Ca(i)(2+) wave propagates. In addition, the spatial patterns of Ca(i)(2+) wave propagation depend on whether IP(3), ATP, or both are mediating messengers. Finally, two different geometries that reflect the in vivo and in vitro configuration of astrocytic networks also yield distinct intracellular and extracellular kinetic patterns. The simulation results as well as the linear stability analysis of the model lead to the conclusion that Ca(i)(2+) waves in astrocyte networks are probably mediated by both intercellular IP(3) transport and nonregenerative (only the glutamate-stimulated cell releases ATP) or partially regenerative extracellular ATP signaling.

Indexed as

Models, BiologicalNonlinear DynamicsAdenosine TriphosphateAlgorithmsAnimalsBiological ClocksCalcium ChannelsCalcium SignalingComputer SimulationHumansInositol 1,4,5-Trisphosphate ReceptorsIon Channel GatingModels, StatisticalOscillometryAdenosine TriphosphateCalcium ChannelsInositol 1,4,5-Trisphosphate Receptors

Identifiers

PMID19792041
PMCPMC2852438

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.