Evidence map›Paper›PMID 19789905›Full record

ArticleThe Journal of membrane biology2009

Alamethicin aggregation in lipid membranes.

Jianjun Pan, Stephanie Tristram-Nagle, John F Nagle

Open access · greenAbstract read
In one paragraph

Article in The Journal of membrane biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 45 citations in OpenAlex.

  1. Review
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  14. A thermodynamic approach to alamethicin pore formation.Biochimica et biophysica acta · 2014
    Article
  15. Article
  16. Article
  17. Direct visualization of the alamethicin pore formed in a planar phospholipid matrix.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  18. Toward understanding protocell mechanosensation.Origins of life and evolution of the biosphere : the journal of the International Society for the Study of the Origin of Life · 2011
    Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Jianjun PanDepartment of Physics, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
Stephanie Tristram-Nagle
John F Nagle
Carnegie Mellon University · US

Funding

STRUCTURE OF LIPID BILAYERSR01GM044976 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI NAGLE, JOHN F, TRISTRAM-NAGLE, STEPHANIE · 1990 to 2014
$3.1M
NIGMS NIH HHS DMR-0225180NIGMS NIH HHS GM44976NIGMS NIH HHS R01 GM044976
6 · The paper itself

Abstract

X-ray scattering features induced by aggregates of alamethicin (Alm) were obtained in oriented stacks of model membranes of DOPC(diC18:1PC) and diC22:1PC. The first feature obtained near full hydration was Bragg rod in-plane scattering near 0.11 A(-1) in DOPC and near 0.08 A(-1) in diC22:1PC at a 1:10 Alm:lipid ratio. This feature is interpreted as bundles consisting of n Alm monomers in a barrel-stave configuration surrounding a water pore. Fitting the scattering data to previously published molecular dynamics simulations indicates that the number of peptides per bundle is n = 6 in DOPC and n >or= 9 in diC22:1PC. The larger bundle size in diC22:1PC is explained by hydrophobic mismatch of Alm with the thicker bilayer. A second diffuse scattering peak located at q(r) approximately 0.7 A(-1) is obtained for both DOPC and diC22:1PC at several peptide concentrations. Theoretical calculations indicate that this peak cannot be caused by the Alm bundle structure. Instead, we interpret it as being due to two-dimensional hexagonally packed clusters in equilibrium with Alm bundles. As the relative humidity was reduced, interactions between Alm in neighboring bilayers produced more peaks with three-dimensional crystallographic character that do not index with the conventional hexagonal space groups.

Indexed as

AlamethicinHydrophobic and Hydrophilic InteractionsIon ChannelsLipid BilayersMembrane LipidsModels, ChemicalModels, MolecularMolecular Dynamics SimulationPhosphatidylcholinesScattering, RadiationX-Ray Diffraction1,2-oleoylphosphatidylcholineAlamethicinIon ChannelsLipid BilayersMembrane LipidsPhosphatidylcholines

Identifiers

PMID19789905
PMCPMC2813886
OpenAlexW2124842017

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.