Evidence map›Paper›PMID 19784376›Full record

ArticlePloS one2009

Isoforms of U1-70k control subunit dynamics in the human spliceosomal U1 snRNP.

Helena Hernández, Olga V Makarova, Evgeny M Makarov, Nina Morgner, Yutaka Muto, Daniel Pomeranz Krummel, Carol V Robinson

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Article
  3. Sm complex assembly and 5' cap trimethylation promote selective processing of snRNAs by the 3' exonuclease TOE1.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Review
  5. Article
  6. Review
  7. Exploring the multifunctionality of SR proteins.Biochemical Society transactions · 2022
    Article
  8. Review
  9. Article
  10. Article
  11. CLK1 reorganizes the splicing factor U1-70K for early spliceosomal protein assembly.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Traveling-wave Ion Mobility-Mass Spectrometry Reveals Additional Mechanistic Details in the Stabilization of Protein Complex Ions through Tuned Salt Additives.International journal for ion mobility spectrometry : official publication of the International Society for Ion Mobility Spectrometry · 2013
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Helena HernándezDepartment of Chemistry, University of Cambridge, Cambridge, United Kingdom.
Olga V Makarova
Evgeny M Makarov
Nina Morgner
Yutaka Muto
Daniel Pomeranz Krummel
Carol V Robinson
Bridge University · SSMRC Laboratory of Molecular Biology · GBBrunel University of London · GBUniversity of Cambridge · GBUniversity of Leicester · GB

Funding

Biotechnology and Biological Sciences Research Council BB/C004272/1Medical Research Council MC_U105184330
6 · The paper itself

Abstract

Most human protein-encoding genes contain multiple exons that are spliced together, frequently in alternative arrangements, by the spliceosome. It is established that U1 snRNP is an essential component of the spliceosome, in human consisting of RNA and ten proteins, several of which are post-translationally modified and exist as multiple isoforms. Unresolved and challenging to investigate are the effects of these post translational modifications on the dynamics, interactions and stability of the particle. Using mass spectrometry we investigate the composition and dynamics of the native human U1 snRNP and compare native and recombinant complexes to isolate the effects of various subunits and isoforms on the overall stability. Our data reveal differential incorporation of four protein isoforms and dynamic interactions of subunits U1-A, U1-C and Sm-B/B'. Results also show that unstructured post-translationally modified C-terminal tails are responsible for the dynamics of Sm-B/B' and U1-C and that their interactions with the Sm core are controlled by binding to different U1-70k isoforms and their phosphorylation status in vivo. These results therefore provide the important functional link between proteomics and structure as well as insight into the dynamic quaternary structure of the native U1 snRNP important for its function.

Indexed as

CatalysisHeLa CellsHumansMass SpectrometryMolecular ConformationProtein IsoformsProtein Processing, Post-TranslationalProtein Structure, QuaternaryProteomicsRecombinant ProteinsRibonucleoprotein, U1 Small NuclearRNARNA, Small NuclearSpectrometry, Mass, Electrospray IonizationSpliceosomesProtein IsoformsRecombinant ProteinsRibonucleoprotein, U1 Small NuclearRNARNA, Small NuclearSNRNP70 protein, human

Identifiers

PMID19784376
PMCPMC2747018
OpenAlexW2105575347

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.