Evidence map›Paper›PMID 19784370›Full record

ArticlePloS one2009

Early events associated with infection of Epstein-Barr virus infection of primary B-cells.

Sabyasachi Halder, Masanao Murakami, Subhash C Verma, Pankaj Kumar, Fuming Yi, Erle S Robertson

RetractedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 89 citations in OpenAlex.

  1. Trial
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  9. Article
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  11. TemporalACS omega · 2020
    Article
  12. Article
  13. Article
  14. Epigenetic lifestyle of Epstein-Barr virus.Seminars in immunopathology · 2020
    Review
  15. Article
  16. Review
  17. Review
  18. Review
  19. Review
  20. Review

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Sabyasachi HalderDepartment of Microbiology, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, United States of America.
Masanao Murakami
Subhash C Verma
Pankaj Kumar
Fuming Yi
Erle S Robertson
University of Pennsylvania · US

Funding

Mechanism of EBNA mediated cell migrationR01CA108461 · NCI · UNIVERSITY OF PENNSYLVANIA · PI ROBERTSON, ERLE S. · 2004 to 2008
$1.7M
EBV Antigen and Cell Cycle RegulationR01CA137894 · NCI · UNIVERSITY OF PENNSYLVANIA · PI ROBERTSON, ERLE S. · 2009 to 2013
$1.4M
Understanding the mechanism of KSHV latent DNA replicationK99CA126182 · NCI · UNIVERSITY OF PENNSYLVANIA · PI VERMA, SUBHASH C · 2007 to 2008
$250k
NCI NIH HHS 1R01CA137894-01NCI NIH HHS 5R01CA108461-05NCI NIH HHS K99 CA126182NCI NIH HHS R01 CA108461NCI NIH HHS R01 CA137894
6 · The paper itself

Abstract

Epstein Barr virus (EBV) is closely associated with the development of a vast number of human cancers. To develop a system for monitoring early cellular and viral events associated with EBV infection a self-recombining BAC containing 172-kb of the Epstein Barr virus genome BAC-EBV designated as MD1 BAC (Chen et al., 2005, J.Virology) was used to introduce an expression cassette of green fluorescent protein (GFP) by homologous recombination, and the resultant BAC clone, BAC-GFP-EBV was transfected into the HEK 293T epithelial cell line. The resulting recombinant GFP EBV was induced to produce progeny virus by chemical inducer from the stable HEK 293T BAC GFP EBV cell line and the virus was used to immortalize human primary B-cell as monitored by green fluorescence and outgrowth of the primary B cells. The infection, B-cell activation and cell proliferation due to GFP EBV was monitored by the expression of the B-cell surface antigens CD5, CD10, CD19, CD23, CD39, CD40 , CD44 and the intercellular proliferation marker Ki-67 using Flow cytometry. The results show a dramatic increase in Ki-67 which continues to increase by 6-7 days post-infection. Likewise, CD40 signals showed a gradual increase, whereas CD23 signals were increased by 6-12 hours, maximally by 3 days and then decreased. Monitoring the viral gene expression pattern showed an early burst of lytic gene expression. This up-regulation of lytic gene expression prior to latent genes during early infection strongly suggests that EBV infects primary B-cell with an initial burst of lytic gene expression and the resulting progeny virus is competent for infecting new primary B-cells. This process may be critical for establishment of latency prior to cellular transformation. The newly infected primary B-cells can be further analyzed for investigating B cell activation due to EBV infection.

Indexed as

Cell Transformation, ViralAntigens, SurfaceB-LymphocytesCell LineChromosomes, Artificial, BacterialDNA PrimersEpstein-Barr Virus InfectionsFlow CytometryGenome, ViralGreen Fluorescent ProteinsHerpesvirus 4, HumanHumansLymphocyte ActivationModels, GeneticReverse Transcriptase Polymerase Chain ReactionAntigens, SurfaceDNA PrimersGreen Fluorescent Proteins

Identifiers

PMID19784370
PMCPMC2746279
OpenAlexW2055175949

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.