Evidence map›Paper›PMID 19783816›Full record

ArticleNucleic acids research2009

The HSV-1 ICP27 RGG box specifically binds flexible, GC-rich sequences but not G-quartet structures.

Kara A Corbin-Lickfett, I-Hsiung Brandon Chen, Melanie J Cocco, Rozanne M Sandri-Goldin

Abstract read
In one paragraph

Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Sequence-specific RNA recognition by an RGG motif connects U1 and U2 snRNP for spliceosome assembly.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. TheJournal of virology · 2019
    Article
  13. Article
  14. Review
  15. Herpes simplex virus ICP27 regulates alternative pre-mRNA polyadenylation and splicing in a sequence-dependent manner.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Kara A Corbin-LickfettDepartment of Microbiology and Molecular Genetics, University of California Irvine, Irvine, CA 92697, USA.
I-Hsiung Brandon Chen
Melanie J Cocco
Rozanne M Sandri-Goldin

Funding

Herpes simplex virus gene regulationR37AI021515 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI SANDRI-GOLDIN, ROZANNE M · 2002 to 2011
$3.8M
Domain structure and interactions of HSV-1 ICP27R01AI061397 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI SANDRI-GOLDIN, ROZANNE M · 2004 to 2008
$1.8M
HERPES SIMPLEX VIRUS GENE REGULATIONR01AI021515 · NIAID · UNIVERSITY OF CALIFORNIA IRVINE · PI SANDRI-GOLDIN, ROZANNE M. · 1985 to 2001
$557k
Structural Analysis of the HSV-1 ICP27 proteinF32AI062033 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI CORBIN-LICKFETT, KARA A · 2005 to 2007
$143k
NIAID NIH HHS AI 21515NIAID NIH HHS AI 61397NIAID NIH HHS F32 AI062033NIAID NIH HHS R01 AI61397NIAID NIH HHS R37 AI021515
6 · The paper itself

Abstract

Herpes simplex virus 1 (HSV-1) protein ICP27, an important regulator for viral gene expression, directly recognizes and exports viral RNA through an N-terminal RGG box RNA binding motif, which is necessary and sufficient for RNA binding. An ICP27 N-terminal peptide, including the RGG box RNA binding motif, was expressed and its binding specificity was analyzed using EMSA and SELEX. DNA oligonucleotides corresponding to HSV-1 glycoprotein C (gC) mRNA, identified in a yeast three-hybrid analysis, were screened for binding to the ICP27 N-terminal peptide in EMSA experiments. The ICP27 N-terminus was able to bind most gC substrates. Notably, the ICP27 RGG box was unable to bind G-quartet structures recognized by the RGG domains of other proteins. SELEX analysis identified GC-rich RNA sequences as a common feature of recognition. NMR analysis of SELEX and gC sequences revealed that sequences able to bind to ICP27 did not form secondary structures and conversely, sequences that were not able to bind to ICP27 gave spectra consistent with base-pairing. Therefore, the ICP27 RGG box is unique in its recognition of nucleic acid sequences compared to other RGG box proteins; it prefers flexible, GC-rich substrates that do not form stable secondary structures.

Indexed as

GC Rich SequenceBase SequenceBinding SitesDNA, ViralElectrophoretic Mobility Shift AssayG-QuadruplexesImmediate-Early ProteinsMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularProtein Structure, TertiaryRNA-Binding ProteinsRNA, ViralSELEX Aptamer TechniqueViral Envelope ProteinsDNA, Viralglycoprotein gC, herpes simplex virus type 1ICP27 protein, human herpesvirus 1Immediate-Early ProteinsRNA-Binding ProteinsRNA, ViralViral Envelope Proteins

Identifiers

PMID19783816
PMCPMC2790906

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.