Evidence map›Paper›PMID 19783527›Full record

ArticleJournal of lipid research2010

The genetic architecture of lipoprotein subclasses in Gullah-speaking African American families enriched for type 2 diabetes: the Sea Islands Genetic African American Registry (Project SuGAR).

Jasmin Divers, Michèle M Sale, Lingyi Lu, Wei-Min Chen, Kerry H Lok, Ida J Spruill, Jyotika K Fernandes, Carl D Langefeld, W Timothy Garvey

Open access · hybridAbstract read
In one paragraph

Article in Journal of lipid research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
0.4field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 10 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Genetic landscape of Gullah African Americans.American journal of physical anthropology · 2021
    Article
  5. Co-shared genetics and possible risk gene pathway partially explain the comorbidity of schizophrenia, major depressive disorder, type 2 diabetes, and metabolic syndrome.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2019
    Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Jasmin DiversDepartment of Biostatistical Sciences, Wake Forest University School of Medicine, Winston-Salem, NC, USA. jdivers@wfubmc.edu
Michèle M Sale
Lingyi Lu
Wei-Min Chen
Kerry H Lok
Ida J Spruill
Jyotika K Fernandes
Carl D Langefeld
W Timothy Garvey
Wake Forest University · USMedical University of South Carolina · USUniversity of Alabama at Birmingham · USUniversity of Virginia · US

Funding

WORKER PROTECTION AGAINST AIRBORNE INFLUENZA - A PILOT STUDYM01RR007122 · NCRR · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI HUNDLEY, WILLIAM GREGORY · 1992 to 2010
$35.2M
Why is the prevalence of obesity so high in U.S. Southern States? Regional predictors of BMI and obesity treatment response.P30DK056336 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI James O Hill · 2000 to 2026
$31.9M
THE ROLE OF THE RNA BINDING PROTEIN LA IN ORAL TUMOR BIOLOGYP20RR017696 · NCRR · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI KIRKWOOD, KEITH L · 2002 to 2011
$20.7M
ZINC AND COPPER METABOLISM IN COLLAGEN DISORDERSM01RR001070 · NCRR · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI REVES, JOSEPH G · 1985 to 2009
$16.3M
UAB Diabetes Research and Training CenterP60DK079626 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI GARVEY, W TIMOTHY · 2008 to 2012
$8.4M
Genetics of African American Type 2 DiabetesR01DK066358 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI NG, MAGGIE · 2003 to 2019
$6.2M
MECHANISMS OF HUMAN INSULIN RESISTANCER01DK038765 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI GARVEY, W TIMOTHY · 1993 to 2010
$4.0M
GENOTYPING FOR LOCATING HUMAN DISEASE GENESN01HG065403 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID L · 1996 to 2000
$1.7M
GENETIC MARKERS FOR NIDDM &PATHOGENIC METABOLIC TRAITSR01DK047461 · NIDDK · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI GARVEY, W TIMOTHY · 1993 to 1997
–
ROLE OF GLUCOSE TRANSPORT PROTEINS IN DIABETES MELLITUSR29DK038765 · NIDDK · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI GARVEY, W TIMOTHY · 1988 to 1992
–
NCRR NIH HHS M01 RR001070NCRR NIH HHS M01 RR007122NCRR NIH HHS M01 RR-1070NCRR NIH HHS P20 RR017696NCRR NIH HHS P20 RR17696NHGRI NIH HHS N01 HG065403NIDDK NIH HHS DK038765NIDDK NIH HHS P30 DK056336NIDDK NIH HHS P30 DK-56336NIDDK NIH HHS P60 DK079626NIDDK NIH HHS R01 DK038765NIDDK NIH HHS R01 DK047461NIDDK NIH HHS R01 DK066358
6 · The paper itself

Abstract

We sought to partition the genetic and environmental influences on lipoprotein subclasses and identify genomic regions that may harbor genetic variants that influence serum lipoprotein levels in a sample of Gullah-speaking African-Americans. We genotyped 5,974 SNPs in 979 subjects from 418 pedigrees and used the variance component approach to compute heritability estimates, genetic and environmental correlations, and linkage analyses for selected lipoprotein subclasses. The highest heritability estimate was observed for large VLDL particle concentration (0.56 +/- 0.14). Mean LDL particle size and small LDL particle concentration (-0.94) had the strongest genetic correlation estimate. The highest logarithm of odds (LOD) score detected (3.0) was on chromosome 6p24 for small LDL particle concentration. The strongest signal, obtained with the reduced sample of diabetic individuals only, was observed on chromosome 20p13 for small LDL particle concentration. The highest bivariate linkage signal (LOD 2.4) was observed on chromosome 6p24 for mean LDL particle size and small LDL particle concentration. Our results suggest a significant genetic contribution to multiple lipoprotein subclasses studied in this sample and that novel loci on chromosomes 6, 10, 16, and 20 may harbor genes contributing to small, atherogenic LDL particle concentration and large, triglyceride-rich VLDL particle concentration.

Indexed as

RegistriesAdultAnalysis of VarianceBlack or African AmericanDiabetes Mellitus, Type 2FemaleHumansLipoproteinsMaleMiddle AgedParticle SizePhenotypeUnited StatesLipoproteins

Identifiers

PMID19783527
PMCPMC2817588
OpenAlexW2096512411

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.