Evidence map›Paper›PMID 19782160›Full record

ArticleBiochimica et biophysica acta

Interaction of intestinal and pancreatic transcription factors in the regulation of CFTR gene expression.

Victoria A McCarthy, Christopher J Ott, Marios Phylactides, Ann Harris

Abstract read
In one paragraph

Article in Biochimica et biophysica acta. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.6field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. International journal of molecular sciences · 2025
    Article
  3. Tissue-Specific Regulation ofInternational journal of molecular sciences · 2023
    Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. The cystic fibrosis gene: a molecular genetic perspective.Cold Spring Harbor perspectives in medicine · 2013
    Review
  9. Article
  10. Molecular mechanisms controlling CFTR gene expression in the airway.Journal of cellular and molecular medicine · 2012
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Victoria A McCarthyPaediatric Molecular Genetics, Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Oxford, UK.
Christopher J Ott
Marios Phylactides
Ann Harris
Northwestern University · USJohn Radcliffe Hospital · GBUniversity of Oxford · GB

Funding

Tissue-specific regulation of a gene essential for normal airway epitheliaR01HL094585 · NHLBI · LURIE CHILDREN'S HOSPITAL OF CHICAGO · PI HARRIS, ANN · 2009 to 2020
$2.9M
NHLBI NIH HHS R01 HL094585
6 · The paper itself

Abstract

The tissue-specific regulation of the cystic fibrosis transmembrane conductance regulator gene (CFTR) is coordinated by intronic and extragenic cis-acting elements that influence its transcriptional activity. The promoter apparently lacks sequences to drive cell type-specific expression. We previously identified a number of intronic elements that were associated with DNase I hypersensitive sites (DHS) and bound the hepatocyte nuclear factor 1 (HNF1) transcription factor. Moreover, we demonstrated the likely involvement of HNF1 in the regulation of CFTR expression in vivo. Here we investigate DHS in introns 16 and 17a of the CFTR gene, which are evident in intestinal and pancreatic cell lines, and determine the transcription factors that interact with these sites. Of particular interest were factors known to interact with HNF1 in coordinated expression of genes in the gastrointestinal tract. We demonstrate that though sequences within these DHS bind HNF1, CDX2, and PBX1 in vitro, only PBX1 show a robust in vivo interaction. These data contribute to our understanding of the complexity of cell-type-specific CFTR regulatory mechanisms.

Indexed as

Gene Expression Regulation, NeoplasticBase SequenceBinding SitesBlotting, WesternCaco-2 CellsCDX2 Transcription FactorCell Line, TumorChromatin ImmunoprecipitationCystic Fibrosis Transmembrane Conductance RegulatorDeoxyribonuclease IDNA-Binding ProteinsDNA FootprintingElectrophoretic Mobility Shift AssayHepatocyte Nuclear Factor 1-alphaHomeodomain ProteinsHumansCDX2 protein, humanCDX2 Transcription FactorCystic Fibrosis Transmembrane Conductance RegulatorDeoxyribonuclease IDNA-Binding ProteinsHepatocyte Nuclear Factor 1-alphaHNF1A protein, humanHomeodomain ProteinsPBX1 protein, humanPre-B-Cell Leukemia Transcription Factor 1Proto-Oncogene ProteinsTranscription Factors

Identifiers

PMID19782160
PMCPMC2783911
OpenAlexW2080207188

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.