Evidence map›Paper›PMID 19781100›Full record

ArticleMolecular cytogenetics2009

Candidate metastasis suppressor genes uncovered by array comparative genomic hybridization in a mouse allograft model of prostate cancer.

Yajun Yi, Srinivas Nandana, Thomas Case, Colleen Nelson, Tatjana Radmilovic, Robert J Matusik, Karen D Tsuchiya

Abstract read
In one paragraph

Article in Molecular cytogenetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yajun YiClinical Research Division, Fred Hutchinson Cancer Research Center and Department of Laboratories, Seattle Children's Hospital, WA, USA. karen.tsuchiya@seattlechildrens.org.
Srinivas Nandana
Thomas Case
Colleen Nelson
Tatjana Radmilovic
Robert J Matusik
Karen D Tsuchiya

Funding

TRANSGENIC MOUSE MODEL FOR PROSTATE CANCERR01CA076142 · NCI · VANDERBILT UNIVERSITY · PI MATUSIK, ROBERT J. · 1998 to 2012
$4.8M
Identifying Metastasis-Suppressor Genes in CancerK01CA114033 · NCI · VANDERBILT UNIVERSITY · PI YI, YAJUN · 2006 to 2010
$805k
NCI NIH HHS K01 CA114033NCI NIH HHS R01 CA076142
6 · The paper itself

Abstract

backgroundThe purpose of this study was to identify candidate metastasis suppressor genes from a mouse allograft model of prostate cancer (NE-10). This allograft model originally developed metastases by twelve weeks after implantation in male athymic nude mice, but lost the ability to metastasize after a number of in vivo passages. We performed high resolution array comparative genomic hybridization on the metastasizing and non-metastasizing allografts to identify chromosome imbalances that differed between the two groups of tumors.

resultsThis analysis uncovered a deletion on chromosome 2 that differed between the metastasizing and non-metastasizing tumors. Bioinformatics filters were employed to mine this region of the genome for candidate metastasis suppressor genes. Of the 146 known genes that reside within the region of interest on mouse chromosome 2, four candidate metastasis suppressor genes (Slc27a2, Mall, Snrpb, and Rassf2) were identified. Quantitative expression analysis confirmed decreased expression of these genes in the metastasizing compared to non-metastasizing tumors.

conclusionThis study presents combined genomics and bioinformatics approaches for identifying potential metastasis suppressor genes. The genes identified here are candidates for further studies to determine their functional role in inhibiting metastases in the NE-10 allograft model and human prostate cancer.

Identifiers

PMID19781100
PMCPMC2761934

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