Evidence map›Paper›PMID 19780025›Full record

ArticleJournal of cellular physiology2010

Mutations in the external loops of BK virus VP1 and urine viral load in renal transplant recipients.

Sara Tremolada, Serena Delbue, Lorenzo Castagnoli, Sara Allegrini, Umberto Miglio, Renzo Boldorini, Francesca Elia, Jennifer Gordon, Pasquale Ferrante

Abstract read
In one paragraph

Article in Journal of cellular physiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 39 citations in OpenAlex.

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  11. Intra-patient viral evolution in polyomavirus-related diseases.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Sara TremoladaDepartment of Public Health-Microbiology-Virology, University of Milan, Milan, Italy.
Serena Delbue
Lorenzo Castagnoli
Sara Allegrini
Umberto Miglio
Renzo Boldorini
Francesca Elia
Jennifer Gordon
Pasquale Ferrante
University of Milan · ITUniversità degli Studi del Piemonte Orientale “Amedeo Avogadro” · ITTemple University · US

Funding

Pathogenesis of leukoencephalopathies in HIV+ patientsR01MH072528 · NIMH · SAINT JOSEPH HOSPITAL · PI FERRANTE, PASQUALE · 2005 to 2009
$1.2M
NIMH NIH HHS R01 MH072528NIMH NIH HHS R01-MH072528
6 · The paper itself

Abstract

Polyomavirus-associated nephropathy (PVAN) is a major complication that occurs after renal transplantation and is induced by reactivation of the human polyomavirus BK (BKV). The structure of the viral capsid protein 1 (VP1) is characterized by the presence of external loops, BC, DE, EF, GH, and HI, which are involved in receptor binding. The pathogenesis of PVAN is not well understood, but viral risk factors are thought to play a crucial role in the onset of this pathology. In an attempt to better understand PVAN pathogenesis, the BKV-VP1 coding region was amplified, cloned, and sequenced from the urine of kidney transplant recipients who did, and did not, develop the pathology. Urine viral loads were determined by using real time quantitative PCR (Q-PCR). Amino acid substitutions were detected in 6/8 patients, and 6/7 controls. The BC and EF loop regions were most frequently affected by mutations, while no mutations were found within the GH and HI loops of both patients and controls. Some mutations, that were exclusively detected in the urine of PVAN patients, overlapped with previously reported mutations, although a correlation between changes in amino acids and the development of PVAN was not found. Urine viral loads were higher than that of the proposed cut-off loads for identification of patients that are at a high risk of developing PVAN (10(7) copies/ml), both in the PVAN and control groups, thus confirming that urine viral load is not a useful predictive marker for the development of PVAN.

Indexed as

Kidney TransplantationViral LoadAdultAgedAmino Acid SubstitutionBK VirusCase-Control StudiesConsensus SequenceDemographyFemaleGenotypeHumansMaleMiddle AgedMutationPolyomavirus InfectionsViral Proteins

Identifiers

PMID19780025
PMCPMC2783606
OpenAlexW2149392425

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.