Evidence map›Paper›PMID 19779973›Full record

ArticleDigestive diseases and sciences2010

Intestinal ischemic preconditioning after ischemia/reperfusion injury in rat intestine: profiling global gene expression patterns.

Stacey D Moore-Olufemi, Shodimu-Emmanuel Olufemi, Steve Lott, Norio Sato, Rosemary A Kozar, Frederick A Moore, Ravi S Radhakrishnan, Shinil Shah, Fernando Jimenez, Bruce C Kone and 1 more

Abstract readComparative Study
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In one paragraph

Article in Digestive diseases and sciences, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Stacey D Moore-OlufemiDepartment of Pediatric Surgery, University of Texas Medical School at Houston, Houston, TX 77030, USA. stacey.d.moore-olufemi@uth.tmc.edu
Shodimu-Emmanuel Olufemi
Steve Lott
Norio Sato
Rosemary A Kozar
Frederick A Moore
Ravi S Radhakrishnan
Shinil Shah
Fernando Jimenez
Bruce C Kone
Charles S Cox

Funding

SUMS)P50GM038529 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MERCER, DAVID W · 1988 to 2008
$11.7M
ROLE OF THE GUT IN POST INJURY MULTIPLE ORGAN FAILURET32GM008792 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Charles S Cox · 2001 to 2026
$5.2M
NIGMS NIH HHS P50 GM38529NIGMS NIH HHS T32 GM 08792
6 · The paper itself

Abstract

objectiveIntestinal ischemia/reperfusion (IR) injury involves activation of inflammatory mediators, mucosal necrosis, ileus, and alteration in a variety of gene products. Ischemic preconditioning (IPC) reduced all the effects of intestinal injury seen in IR. In an effort to investigate the molecular mechanisms responsible for the protective effects afforded by IPC, we sought to characterize the global gene expression pattern in rats subjected to IPC in the setting of IR injury.

methodsRats were randomized into five groups: (1) Sham, (2) IPC only (3) IR, (4) Early IPC + IR (IPC --> IR), and (5) Late IPC + IR (IPC --> 24 h --> IR). At 6 h after reperfusion, ileum was harvested for total RNA isolation, pooled, and analyzed on complementary DNA (cDNA) microarrays with validation using real-time polymerase chain reaction (PCR). Significance Analysis of Microarray (SAM) software was used to determine statistically significant changes in gene expression.

resultsEarly IPC + IR had 5,167 induced and 4 repressed genes compared with the other groups. SAM analysis revealed 474 out of 10,000 genes differentially expressed among the groups. Early and Late IPC + IR had more genes involved in redox hemostasis, the immune/inflammatory response, and apoptosis than either the IPC only or IR alone groups.

conclusionThe transcriptional profile suggests that IPC exerts its protective effects by regulating the gene response to injury in the intestine.

Indexed as

Gene Expression ProfilingAnalysis of VarianceAnimalsCluster AnalysisDisease Models, AnimalGene Expression RegulationIleumIntestinal MucosaIschemic PreconditioningMaleMicroarray AnalysisOligonucleotide Array Sequence AnalysisProbabilityRandom AllocationRatsRats, Sprague-DawleyRNA

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.