Evidence map›Paper›PMID 19779567›Full record

ArticlePLoS pathogens2009

TbPIF5 is a Trypanosoma brucei mitochondrial DNA helicase involved in processing of minicircle Okazaki fragments.

Beiyu Liu, Jianyang Wang, Gokben Yildirir, Paul T Englund

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 27 citations in OpenAlex.

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  11. A passion for parasites.The Journal of biological chemistry · 2014
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Beiyu LiuDepartment of Biological Chemistry, Johns Hopkins Medical School, Baltimore, Maryland, United States of America.
Jianyang Wang
Gokben Yildirir
Paul T Englund
Johns Hopkins University · US

Funding

STRUCTURE AND SYNTHESIS OF DNAR01AI058613 · NIAID · JOHNS HOPKINS UNIVERSITY · PI JENSEN, ROBERT E · 2004 to 2013
$7.4M
NIAID NIH HHS AI058613NIAID NIH HHS R01 AI058613
6 · The paper itself

Abstract

Trypanosoma brucei's mitochondrial genome, kinetoplast DNA (kDNA), is a giant network of catenated DNA rings. The network consists of a few thousand 1 kb minicircles and several dozen 23 kb maxicircles. Here we report that TbPIF5, one of T. brucei's six mitochondrial proteins related to Saccharomyces cerevisiae mitochondrial DNA helicase ScPIF1, is involved in minicircle lagging strand synthesis. Like its yeast homolog, TbPIF5 is a 5' to 3' DNA helicase. Together with other enzymes thought to be involved in Okazaki fragment processing, TbPIF5 localizes in vivo to the antipodal sites flanking the kDNA. Minicircles in wild type cells replicate unidirectionally as theta-structures and are unusual in that Okazaki fragments are not joined until after the progeny minicircles have segregated. We now report that overexpression of TbPIF5 causes premature removal of RNA primers and joining of Okazaki fragments on theta structures. Further elongation of the lagging strand is blocked, but the leading strand is completed and the minicircle progeny, one with a truncated H strand (ranging from 0.1 to 1 kb), are segregated. The minicircles with a truncated H strand electrophorese on an agarose gel as a smear. This replication defect is associated with kinetoplast shrinkage and eventual slowing of cell growth. We propose that TbPIF5 unwinds RNA primers after lagging strand synthesis, thus facilitating processing of Okazaki fragments.

Indexed as

Adenosine TriphosphatasesDNADNA HelicasesDNA, KinetoplastDNA PrimersGene Knockout TechniquesMicroscopy, ElectronMicroscopy, FluorescenceMicroscopy, Phase-ContrastProto-Oncogene Proteins c-mycProtozoan ProteinsRecombinant ProteinsRNA InterferenceTrypanosoma brucei bruceiAdenosine TriphosphatasesDNADNA HelicasesDNA, KinetoplastDNA PrimersOkazaki fragmentsProto-Oncogene Proteins c-mycProtozoan ProteinsRecombinant Proteins

Identifiers

PMID19779567
PMCPMC2743194
OpenAlexW1965868219

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.