Evidence map›Paper›PMID 19779017›Full record

ArticleAmerican journal of physiology. Gastrointestinal and liver physiology2009

Polysome trafficking of transcripts and microRNAs in regenerating liver after partial hepatectomy.

Betsy T Kren, Phillip Y-P Wong, Akira Shiota, Xiaoxiao Zhang, Yan Zeng, Clifford J Steer

Open access · greenAbstract read
In one paragraph

Article in American journal of physiology. Gastrointestinal and liver physiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 24 citations in OpenAlex.

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  12. Differential regulation of polysome mRNA levels in mouse Hepa-1C1C7 cells exposed to dioxin.Toxicology in vitro : an international journal published in association with BIBRA · 2011
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Betsy T KrenDept. of Medicine, Univ. of Minnesota Medical School, Minneapolis, 55455, USA. krenx001@umn.edu
Phillip Y-P Wong
Akira Shiota
Xiaoxiao Zhang
Yan Zeng
Clifford J Steer
Immunovaccine (Canada) · CAUniversity of Minnesota Medical Center · US

Funding

Subcellular Targeting/Packaging of Opioids/ReceptorsP50DA011806 · NIDA · UNIVERSITY OF MINNESOTA TWIN CITIES · PI WICKMAN, KEVIN D · 1998 to 2012
$14.0M
In Utero Correction of the OTC Defect in LiverR01DK067436 · NIDDK · UNIVERSITY OF MINNESOTA · PI KREN, BETSY T · 2007 to 2011
$1.4M
microRNA Uncoupling of Protein and Transcript Expression in Liver RegenerationR01DK081865 · NIDDK · UNIVERSITY OF MINNESOTA · PI STEER, CLIFFORD JOHN · 2009 to 2010
$965k
MOLECULAR REGULATION OF LIVER REGENERATIONR01DK044649 · NIDDK · UNIVERSITY OF MINNESOTA TWIN CITIES · PI STEER, CLIFFORD J. · 1992 to 1999
–
NIDA NIH HHS DA-011806NIDDK NIH HHS R01 DK067436NIDDK NIH HHS R01-DK-081865-01NIDDK NIH HHS R01-DK-44649-06
6 · The paper itself

Abstract

Liver regeneration after 70% partial hepatectomy (PH) in rats induces >95% of hepatocytes to undergo two rounds of semisynchronous cell replication. Gene expression is controlled primarily by posttranscriptional processing, including changes in mRNA stability. However, the translational activity of a specific mRNA can also be modulated after PH, resulting in significant uncoupling of protein and transcript levels relative to quiescent liver for many genes including c-myc and p53. Although the precise mechanism by which this uncoupling occurs is unknown, the polysomal association of mRNA and microRNA (miRNA) can significantly modulate rate of decay as well as translational activity. Thus we characterized the association of c-myc and p53 mRNAs and miRNAs in free and cytoskeleton- and membrane-bound polysome populations 3, 6, and 24 h after PH. The transcripts for c-myc and p53 were differentially distributed in the three discrete polysome populations, and this was dramatically modulated during liver regeneration. Nascent polysome-associated p53 and c-myc proteins were also differentially expressed in the free and cytoskeleton- and membrane-bound polysomes and significantly uncoupled from transcript levels relative to nonresected liver. At least 85 miRNAs were associated with the three polysome populations, and their abundance and distribution changed significantly during liver regeneration. These data suggest that posttranscriptional control of c-myc and p53 protein expression is associated with the translocation of transcripts between the different polyribosomes. The alteration of expression for the same transcript in different polysome populations may, in part, be due to the action of miRNAs.

Indexed as

HepatectomyRNA Processing, Post-TranscriptionalAnimalsBiological TransportCell ProliferationGene Expression ProfilingLiverLiver RegenerationMaleMicroRNAsModels, AnimalOligonucleotide Array Sequence AnalysisPolyribosomesProto-Oncogene Proteins c-mycRatsRats, Sprague-DawleyMicroRNAsProto-Oncogene Proteins c-mycRNA, MessengerTumor Suppressor Protein p53

Identifiers

PMID19779017
PMCPMC2850097
OpenAlexW2100227072

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.