Evidence map›Paper›PMID 19779014›Full record

ArticleAmerican journal of physiology. Gastrointestinal and liver physiology2009

Alternative promoter and GATA5 transcripts in mouse.

Bohao Chen, Elena Yates, Yong Huang, Paul Kogut, Lan Ma, Jerrold R Turner, Yun Tao, Blanca Camoretti-Mercado, Deborah Lang, Eric C Svensson and 4 more

Open access · greenAbstract read
In one paragraph

Article in American journal of physiology. Gastrointestinal and liver physiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. A Combined HumanFrontiers in pharmacology · 2022
    Article
  2. Article
  3. Article
  4. Gata5 deficiency causes airway constrictor hyperresponsiveness in mice.American journal of respiratory cell and molecular biology · 2014
    Article
  5. Article
  6. Loss of Gata5 in mice leads to bicuspid aortic valve.The Journal of clinical investigation · 2011
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Bohao ChenDepartments of Medicine, Univ. of Chicago, IL 60637, USA.
Elena Yates
Yong Huang
Paul Kogut
Lan Ma
Jerrold R Turner
Yun Tao
Blanca Camoretti-Mercado
Deborah Lang
Eric C Svensson
Joe G N Garcia
Peter J Gruber
Edward E Morrisey
Julian Solway
University of Chicago · USUniversity of Pennsylvania · US

Funding

ZO-1-MEDIATED PROTEIN INTERACTIONS: REGULATORS AND INTEGRATORS OF DIVERSE EPITHELIAL FUNCTIONS IN HEALTH AND DISEASER01DK061931 · NIDDK · UNIVERSITY OF CHICAGO · PI JERROLD R. TURNER · 2001 to 2026
$15.0M
T CELL CO-STIMULATION IN ALLERGIC ASTHMAP50HL056399 · NHLBI · UNIVERSITY OF CHICAGO · PI WHITE, STEVEN R · 1996 to 2005
$9.1M
THE ROLE OF GATA6 IN LUNG DEVELOPMENTR01HL064632 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI MORRISEY, EDWARD E · 2000 to 2013
$4.6M
Plasticity Regulation of Contracted Airway Smooth MuscleR01HL079398 · NHLBI · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2005 to 2008
$1.4M
NHLBI NIH HHS HL-007605NHLBI NIH HHS HL-056399NHLBI NIH HHS HL-079398NHLBI NIH HHS R01 HL064632NIAID NIH HHS AI-056352
6 · The paper itself

Abstract

GATA5 is a member of the GATA zinc finger transcription factor family involved in tissue-specific transcriptional regulation during cell differentiation and embryogenesis. Previous reports indicate that null mutation of the zebrafish GATA5 gene results in embryonic lethality, whereas deletion of exon 1 from the mouse GATA5 gene causes only derangement of female urogenital development. Here, we have identified an alternate promoter within intron 1 of the mouse GATA5 gene that transcribes a 2.5-kb mRNA that lacks exon 1 entirely but includes 82 bp from intron 1 and all of exons 2-6. The alternative promoter was active during transient transfection in cultured airway myocytes and bronchial epithelial cells, and it drove reporter gene expression in gastric epithelial cells in transgenic mice. The 2.5-kb alternative transcript encodes an NH(2)-terminally truncated "short GATA5" comprising aa 226-404 with a single zinc finger, which retains ability to transactivate the atrial natriuretic factor promoter (albeit less efficiently than full-length GATA5). Another new GATA5 transcript contains all of exons 1-5 and the 5' portion of exon 6 but lacks the terminal 1143 bp of the 3'-untranslated region from exon 6. These findings extend current understanding of the tissue distribution of GATA5 expression and suggests that GATA5 expression and function are more complex than previously appreciated.

Indexed as

Alternative SplicingPromoter Regions, Genetic3' Untranslated Regions5' Flanking RegionAnimalsAtrial Natriuretic FactorBlotting, NorthernDogsEpithelial CellsExonsGastric MucosaGATA5 Transcription FactorGenes, ReporterIntronsMiceMice, Inbred C57BL3' Untranslated RegionsAtrial Natriuretic FactorGata5 protein, mouseGATA5 Transcription FactorProtein IsoformsRNA, Messenger

Identifiers

PMID19779014
PMCPMC2850090
OpenAlexW2027163151

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.