Evidence map›Paper›PMID 19777566›Full record

ArticleMolecular carcinogenesis2010

Aberrant DNA methylation occurs in colon neoplasms arising in the azoxymethane colon cancer model.

Scott C Borinstein, Melissa Conerly, Slavomir Dzieciatkowski, Swati Biswas, M Kay Washington, Patty Trobridge, Steve Henikoff, William M Grady

Open access · greenAbstract read
In one paragraph

Article in Molecular carcinogenesis, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 2 pooled it
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 2 syntheses or guidelines pooled it, 48 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Review
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  11. Long noncoding RNAs and tumorigenesis: genetic associations, molecular mechanisms, and therapeutic strategies.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
    Review
  12. Review
  13. Article
  14. Connexin and pannexin signaling in gastrointestinal and liver disease.Translational research : the journal of laboratory and clinical medicine · 2015
    Review
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Scott C BorinsteinFred Hutchinson Cancer Research Center, Seattle, Washington 98109-1024, USA.
Melissa Conerly
Slavomir Dzieciatkowski
Swati Biswas
M Kay Washington
Patty Trobridge
Steve Henikoff
William M Grady
Fred Hutch Cancer Center · USVanderbilt University · USUniversity of Washington · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
PEDIATRIC ONCOLOGY RESEARCH TRAINING PROGRAMT32CA009351 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Elizabeth R Lawlor, SOHEIL MESHINCHI · 1985 to 2026
$7.0M
TGF-beta signaling and colon cancerR01CA115513 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GRADY, WILLIAM MALLORY · 2007 to 2011
$1.6M
NCI NIH HHS 2T32CA009351NCI NIH HHS P30 CA015704NCI NIH HHS R01 CA115513NCI NIH HHS T32 CA009351
6 · The paper itself

Abstract

Mouse models of intestinal tumors have advanced our understanding of the role of gene mutations in colorectal malignancy. However, the utility of these systems for studying the role of epigenetic alterations in intestinal neoplasms remains to be defined. Consequently, we assessed the role of aberrant DNA methylation in the azoxymethane (AOM) rodent model of colon cancer. AOM induced tumors display global DNA hypomethylation, which is similar to human colorectal cancer. We next assessed the methylation status of a panel of candidate genes previously shown to be aberrantly methylated in human cancer or in mouse models of malignant neoplasms. This analysis revealed different patterns of DNA methylation that were gene specific. Zik1 and Gja9 demonstrated cancer-specific aberrant DNA methylation, whereas, Cdkn2a/p16, Igfbp3, Mgmt, Id4, and Cxcr4 were methylated in both the AOM tumors and normal colon mucosa. No aberrant methylation of Dapk1 or Mlt1 was detected in the neoplasms, but normal colon mucosa samples displayed methylation of these genes. Finally, p19(Arf), Tslc1, Hltf, and Mlh1 were unmethylated in both the AOM tumors and normal colon mucosa. Thus, aberrant DNA methylation does occur in AOM tumors, although the frequency of aberrantly methylated genes appears to be less common than in human colorectal cancer. Additional studies are necessary to further characterize the patterns of aberrantly methylated genes in AOM tumors.

Indexed as

Disease Models, AnimalDNA MethylationAdaptor Proteins, Signal TransducingAnimalsApoptosis Regulatory ProteinsAzoxymethaneCalcium-Calmodulin-Dependent Protein KinasesCell Adhesion Molecule-1Cell Adhesion MoleculesColonic NeoplasmsConnexinsCyclin-Dependent Kinase Inhibitor p16Death-Associated Protein KinasesDNA-Binding ProteinsDNA Modification MethylasesDNA Repair EnzymesAdaptor Proteins, Signal TransducingApoptosis Regulatory ProteinsAzoxymethaneCadm1 protein, mouseCalcium-Calmodulin-Dependent Protein KinasesCdkn2a protein, mouseCell Adhesion Molecule-1Cell Adhesion MoleculesConnexinsCXCR4 protein, mouseCyclin-Dependent Kinase Inhibitor p16DAPK1 protein, humanDapk1 protein, mouseDeath-Associated Protein KinasesDNA-Binding ProteinsDNA Modification MethylasesDNA Repair EnzymesGap Junction delta-2 ProteinIdb4 protein, mouseImmunoglobulinsInhibitor of Differentiation ProteinsInsulin-Like Growth Factor Binding Protein 3Membrane ProteinsMGMT protein, mouseMlh1 protein, mouseMlt 1 protein, mouseMutL Protein Homolog 1Nuclear ProteinsReceptors, CXCR4Repressor ProteinsSmarca3 protein, mouseTranscription FactorsTumor Suppressor ProteinsZik1 protein, mouse

Identifiers

PMID19777566
PMCPMC2875385
OpenAlexW2049823677

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.