ReviewJournal of molecular microbiology and biotechnology2009
Bioinformatic analyses of transmembrane transport: novel software for deducing protein phylogeny, topology, and evolution.
Review in Journal of molecular microbiology and biotechnology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
33 citing papers in PubMed.
- The Transporter Classification Database (TCDB): 2021 update.Nucleic acids research · 2021Article
- Expansion of the Major Facilitator Superfamily (MFS) to include novel transporters as well as transmembrane-acting enzymes.Biochimica et biophysica acta. Biomembranes · 2020Article
- Bioinformatic characterization of the Anoctamin Superfamily of Ca2+-activated ion channels and lipid scramblases.PloS one · 2018Article
- Exploring the key genes and pathways of osteosarcoma with pulmonary metastasis using a gene expression microarray.Molecular medicine reports · 2017Article
- Characterization of the Tetraspan Junctional Complex (4JC) superfamily.Biochimica et biophysica acta. Biomembranes · 2017Article
- Integrated analysis of mRNA, microRNA and protein in systemic lupus erythematosus-specific induced pluripotent stem cells from urine.BMC genomics · 2016Article
- The Transporter Classification Database (TCDB): recent advances.Nucleic acids research · 2016Article
- Properties and Phylogeny of 76 Families of Bacterial and Eukaryotic Organellar Outer Membrane Pore-Forming Proteins.PloS one · 2016Article
- Article
- The LysE Superfamily of Transport Proteins Involved in Cell Physiology and Pathogenesis.PloS one · 2015Article
- Amino acid uptake in rust fungi.Frontiers in plant science · 2015Article
- Expansion of the APC superfamily of secondary carriers.Proteins · 2014Article
- Establishing homology between mitochondrial calcium uniporters, prokaryotic magnesium channels and chlamydial IncA proteins.Microbiology (Reading, England) · 2014Article
- Major facilitator superfamily porters, LacY, FucP and XylE of Escherichia coli appear to have evolved positionally dissimilar catalytic residues without rearrangement of 3-TMS repeat units.Journal of molecular microbiology and biotechnology · 2014Article
- The transporter classification database.Nucleic acids research · 2014Article
- The transporter-opsin-G protein-coupled receptor (TOG) superfamily.The FEBS journal · 2013Article
- Topological and phylogenetic analyses of bacterial holin families and superfamilies.Biochimica et biophysica acta · 2013Article
- Arginine oscillation explains Na+ independence in the substrate/product antiporter CaiT.Proceedings of the National Academy of Sciences of the United States of America · 2013Article
- Evolutionary relationships of ATP-Binding Cassette (ABC) uptake porters.BMC microbiology · 2013Article
- The major facilitator superfamily (MFS) revisited.The FEBS journal · 2012Article
Corrections and comments
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Authors and funding
3 authors.
Funding
Abstract
During the past decade, we have experienced a revolution in the biological sciences resulting from the flux of information generated by genome-sequencing efforts. Our understanding of living organisms, the metabolic processes they catalyze, the genetic systems encoding cellular protein and stable RNA constituents, and the pathological conditions caused by some of these organisms has greatly benefited from the availability of complete genomic sequences and the establishment of comprehensive databases. Many research institutes around the world are now devoting their efforts largely to genome sequencing, data collection and data analysis. In this review, we summarize tools that are in routine use in our laboratory for characterizing transmembrane transport systems. Applications of these tools to specific transporter families are presented. Many of the computational approaches described should be applicable to virtually all classes of proteins and RNA molecules.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.