Evidence map›Paper›PMID 19776193›Full record

ArticleClinical and vaccine immunology : CVI2009

Evaluation of the anti-East Asian CagA-specific antibody for CagA phenotyping.

Lam Tung Nguyen, Tomohisa Uchida, Akiko Kuroda, Yoshiyuki Tsukamoto, Tuan Dung Trinh, Long Ta, Hong Bang Mai, Dang Quy Dung Ho, Hoa Hai Hoang, Ratha-Korn Vilaichone and 9 more

Open access · diamondAbstract readComparative StudyEvaluation Study
In one paragraph

Article in Clinical and vaccine immunology : CVI, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.5field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Gut pathogens · 2017
    Article
  3. Article
  4. Review
  5. Article
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 3 countries.

Lam Tung NguyenDepartment of Molecular Pathology, Faculty of Medicine, Oita University, Yufu-city, Oita, Japan.
Tomohisa Uchida
Akiko Kuroda
Yoshiyuki Tsukamoto
Tuan Dung Trinh
Long Ta
Hong Bang Mai
Dang Quy Dung Ho
Hoa Hai Hoang
Ratha-Korn Vilaichone
Varocha Mahachai
Takeshi Matsuhisa
Yoko Kudo
Tadayoshi Okimoto
Masaaki Kodama
Kazunari Murakami
Toshio Fujioka
Yoshio Yamaoka
Masatsugu Moriyama
108 Military Central Hospital · VNCho Ray Hospital · VNChulalongkorn University · THNippon Medical School · JPOita University · JPThammasat University Hospital · TH

Funding

REGULATION OF CXC CHEMOKINE EXPRESSION BY H. PYLORIR01DK062813 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI YAMAOKA, YOSHIO · 2004 to 2013
$3.0M
NIDDK NIH HHS R01 DK062813
6 · The paper itself

Abstract

The determination of the cagA genotype is generally based on sequencing the variable 3' region of the cagA gene. In a previous study, we successfully generated an anti-East Asian CagA-specific antibody (anti-EAS Ab) immunoreactive only with the East Asian CagA and not with the Western CagA. In a small number of Japanese patients, anti-EAS Ab appeared to be a useful tool for phenotyping CagA immunohistochemically. The present study was conducted to validate the anti-EAS Ab immunohistochemistry method in a larger number of patients from Vietnam and Thailand. A total of 385 Vietnamese and Thais were recruited. Helicobacter pylori status was determined by a combination of three methods, including culture, histology, and immunohistochemistry with anti-H. pylori antibody. The sensitivity, specificity, and accuracy of the anti-EAS Ab immunohistochemistry method for the diagnosis of CagA phenotype were calculated based on the results of the cagA sequencing as the gold standard. The sensitivity, specificity, and accuracy of our immunohistochemistry method were 96.7%, 97.9%, and 97.1%, respectively. Moreover, anti-EAS Ab was not cross-reactive with noninfected gastric mucosa. In conclusion, immunohistochemistry with anti-EAS Ab appears to be a good method for determination of CagA phenotype.

Indexed as

Antibodies, BacterialAdultAnimalsAntigens, BacterialBacterial ProteinsCross ReactionsDNA, BacterialFemaleHelicobacter InfectionsHelicobacter pyloriHumansImmunohistochemistryMaleMiddle AgedSensitivity and SpecificitySequence Analysis, DNAAntibodies, BacterialAntigens, BacterialBacterial ProteinscagA protein, Helicobacter pyloriDNA, BacterialVirulence Factors

Identifiers

PMID19776193
PMCPMC2772380
OpenAlexW2126914392

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.