Evidence map›Paper›PMID 19776163›Full record

ArticlePlant physiology2009

LIN, a novel type of U-box/WD40 protein, controls early infection by rhizobia in legumes.

Ernö Kiss, Boglárka Oláh, Péter Kaló, Monica Morales, Anne B Heckmann, Andrea Borbola, Anita Lózsa, Katalin Kontár, Patrick Middleton, J Allan Downie and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
11.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 99 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Signaling in Legume-Rhizobia Symbiosis.International journal of molecular sciences · 2023
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. How Many Faces Does the Plant U-Box E3 Ligase Have?International journal of molecular sciences · 2022
    Review
  13. Review
  14. Article
  15. Article
  16. TheFrontiers in plant science · 2020
    Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Ernö KissInstitute of Genetics, Biological Research Center, Szeged 6726, Hungary.
Boglárka Oláh
Péter Kaló
Monica Morales
Anne B Heckmann
Andrea Borbola
Anita Lózsa
Katalin Kontár
Patrick Middleton
J Allan Downie
Giles E D Oldroyd
Gabriella Endre
Institute of Genetics · HUHUN-REN Szegedi Biológiai Kutatóközpont · HUJohn Innes Centre · GB

Funding

Biotechnology and Biological Sciences Research Council BB/D521749/1
6 · The paper itself

Abstract

The formation of a nitrogen-fixing nodule requires the coordinated development of rhizobial colonization and nodule organogenesis. Based on its mutant phenotype, lumpy infections (lin), LIN functions at an early stage of the rhizobial symbiotic process, required for both infection thread growth in root hair cells and the further development of nodule primordia. We show that spontaneous nodulation activated by the calcium- and calmodulin-dependent protein kinase is independent of LIN; thus, LIN is not necessary for nodule organogenesis. From this, we infer that LIN predominantly functions during rhizobial colonization and that the abortion of this process in lin mutants leads to a suppression of nodule development. Here, we identify the LIN gene in Medicago truncatula and Lotus japonicus, showing that it codes for a predicted E3 ubiquitin ligase containing a highly conserved U-box and WD40 repeat domains. Ubiquitin-mediated protein degradation is a universal mechanism to regulate many biological processes by eliminating rate-limiting enzymes and key components such as transcription factors. We propose that LIN is a regulator of the component(s) of the nodulation factor signal transduction pathway and that its function is required for correct temporal and spatial activity of the target protein(s).

Indexed as

Calcium-Calmodulin-Dependent Protein KinasesChromosome MappingCloning, MolecularDNA, PlantGene Expression Regulation, PlantGenes, PlantGenetic Complementation TestLotusMedicago truncatulaMolecular Sequence DataPlant ProteinsPlant Root NodulationPlants, Genetically ModifiedPromoter Regions, GeneticSequence Analysis, DNASignal TransductionCalcium-Calmodulin-Dependent Protein KinasesDNA, PlantPlant ProteinsUbiquitin-Protein Ligases

Identifiers

PMID19776163
PMCPMC2773052
OpenAlexW1969196498

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.