Evidence map›Paper›PMID 19776015›Full record

ArticleThe Journal of biological chemistry2009

Phosphorylation of Williams syndrome transcription factor by MAPK induces a switching between two distinct chromatin remodeling complexes.

Hiroyuki Oya, Atsushi Yokoyama, Ikuko Yamaoka, Ryoji Fujiki, Masayoshi Yonezawa, Min-Young Youn, Ichiro Takada, Shigeaki Kato, Hirochika Kitagawa

RetractedOpen access · hybridAbstract readRetracted Publication
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

  1. Epigenetics.Advances in experimental medicine and biology · 2024
    Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Chromatin-tethered MAPKs.Current opinion in cell biology · 2013
    Review
  7. Article
  8. Article
  9. Genome-scale study of transcription factor expression in the branching mouse lung.Developmental dynamics : an official publication of the American Association of Anatomists · 2012
    Article
  10. Article
  11. Article
  12. Article
  13. WSTF does it all: a multifunctional protein in transcription, repair, and replication.Biochemistry and cell biology = Biochimie et biologie cellulaire · 2011
    Review
  14. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Hiroyuki OyaInstitute of Molecular and Cellular Biosciences, University of Tokyo, Tokyo 113-0032, Japan.
Atsushi Yokoyama
Ikuko Yamaoka
Ryoji Fujiki
Masayoshi Yonezawa
Min-Young Youn
Ichiro Takada
Shigeaki Kato
Hirochika Kitagawa
The University of Tokyo · JPDivision of Molecular & Cellular Biosciences · USJapan Science and Technology Agency · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Changes in the environment of a cell precipitate extracellular signals and sequential cascades of protein modification and elicit nuclear transcriptional responses. However, the functional links between intracellular signaling-dependent gene regulation and epigenetic regulation by chromatin-modifying proteins within the nucleus are largely unknown. Here, we describe novel epigenetic regulation by MAPK cascades that modulate formation of an ATP-dependent chromatin remodeling complex, WINAC (WSTF Including Nucleosome Assembly Complex), an SWI/SNF-type complex containing Williams syndrome transcription factor (WSTF). WSTF, a specific component of two chromatin remodeling complexes (SWI/SNF-type WINAC and ISWI-type WICH), was phosphorylated by the stimulation of MAPK cascades in vitro and in vivo. Ser-158 residue in the WAC (WSTF/Acf1/cbpq46) domain, located close to the N terminus of WSTF, was identified as a major phosphorylation target. Using biochemical analysis of a WSTF mutant (WSTF-S158A) stably expressing cell line, the phosphorylation of this residue (Ser-158) was found to be essential for maintaining the association between WSTF and core BAF complex components, thereby maintaining the ATPase activity of WINAC. WINAC-dependent transcriptional regulation of vitamin D receptor was consequently impaired by this WSTF mutation, but the recovery from DNA damage mediated by WICH was not impaired. Our results suggest that WSTF serves as a nuclear sensor of the extracellular signals to fine-tune the chromatin remodeling activity of WINAC. WINAC mediates a previously unknown MAPK-dependent step in epigenetic regulation, and this MAPK-dependent switching mechanism between the two functionally distinct WSTF-containing complexes might underlie the diverse functions of WSTF in various nuclear events.

Indexed as

MAP Kinase Signaling SystemAnimalsBromodomain Containing ProteinsCell LineCell Line, TumorChromatinDNA DamageEpigenesis, GeneticGene Expression RegulationHumansMiceMice, TransgenicMutationPhosphorylationProtein Structure, TertiaryTranscription FactorsBAZ1B protein, humanBromodomain Containing ProteinsChromatinTranscription Factors

Identifiers

PMID19776015
PMCPMC2781662
OpenAlexW2071065275

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.