Evidence map›Paper›PMID 19774073›Full record

ArticlePloS one2009

Genetic epidemiology of glioblastoma multiforme: confirmatory and new findings from analyses of human leukocyte antigen alleles and motifs.

Wei Song, Avima M Ruder, Liangyuan Hu, Yufeng Li, Rong Ni, Wenshuo Shao, Richard A Kaslow, MaryAnn Butler, Jianming Tang

Abstract read
In one paragraph

Article in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
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  5. Epidemiology of Brain and Other CNS Tumors.Current neurology and neuroscience reports · 2021
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  13. Differential expression and clinical significance of glioblastoma mRNA expression profiles in Uyghur and Han patients in Xinjiang province.Medical science monitor : international medical journal of experimental and clinical research · 2014
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Wei SongDepartment of Epidemiology, University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
Avima M Ruder
Liangyuan Hu
Yufeng Li
Rong Ni
Wenshuo Shao
Richard A Kaslow
MaryAnn Butler
Jianming Tang

Funding

Tissue CoreP50CA097257 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Joseph F Costello · 2002 to 2026
$57.4M
Viral and molecular chemotherapy of malignant CNS tumorsP50CA097247 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI GILLESPIE, G. YANCEY · 2002 to 2009
$13.5M
Heterogeneity in Cytokine Responses to HIV-1 InfectionK02AI076123 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI TANG, JIANMING · 2007 to 2011
$602k
Genetic Epidemiology of Adult Brain Cancer: A Follow-up StudyR03CA128059 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI TANG, JIANMING · 2007 to 2008
$145k
NCI NIH HHS CA097247NCI NIH HHS CA097257NCI NIH HHS CA128059NCI NIH HHS P50 CA097247NCI NIH HHS P50 CA097257NCI NIH HHS R03 CA128059NIAID NIH HHS K02 AI076123
6 · The paper itself

Abstract

backgroundHuman leukocyte antigen (HLA) class I genes mediate cytotoxic T-lymphocyte responses and natural killer cell function. In a previous study, several HLA-B and HLA-C alleles and haplotypes were positively or negatively associated with the occurrence and prognosis of glioblastoma multiforme (GBM). METHODOLOGY/PRINCIPAL

findingsAs an extension of the Upper Midwest Health Study, we have performed HLA genotyping for 149 GBM patients and 149 healthy control subjects from a non-metropolitan population consisting almost exclusively of European Americans. Conditional logistic regression models did not reproduce the association of HLA-B*07 or the B*07-Cw*07 haplotype with GBM. Nonetheless, HLA-A*32, which has previously been shown to predispose GBM patients to a favorable prognosis, was negatively associated with occurrence of GBM (odds ratio=0.41, p=0.04 by univariate analysis). Other alleles (A*29, A*30, A*31 and A*33) within the A19 serology group to which A*32 belongs showed inconsistent trends. Sequencing-based HLA-A genotyping established that A*3201 was the single A*32 allele underlying the observed association. Additional evaluation of HLA-A promoter and exon 1 sequences did not detect any unexpected single nucleotide polymorphisms that could suggest differential allelic expression. Further analyses restricted to female GBM cases and controls revealed a second association with a specific HLA-B sequence motif corresponding to Bw4-80Ile (odds ratio=2.71, p=0.02). CONCLUSIONS/SIGNIFICANCE: HLA-A allelic product encoded by A*3201 is likely to be functionally important to GBM. The novel, sex-specific association will require further confirmation in other representative study populations.

Indexed as

AdolescentAdultAgedAllelesBase SequenceBrain NeoplasmsCase-Control StudiesFemaleGlioblastomaHLA AntigensHumansKiller Cells, NaturalMaleMiddle AgedMolecular EpidemiologyMolecular Sequence DataHLA Antigens

Identifiers

PMID19774073
PMCPMC2742900

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.