Evidence map›Paper›PMID 19773779›Full record

ReviewNature reviews. Molecular cell biology2009

Ubiquitin-binding domains - from structures to functions.

Ivan Dikic, Soichi Wakatsuki, Kylie J Walters

Open access · greenAbstract readReview
In one paragraph

Review in Nature reviews. Molecular cell biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 463 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
463citing papers in PubMed, 1 pooled it
31.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

463 citing papers in PubMed, 1 synthesis or guideline pooled it, 835 citations in OpenAlex.

  1. Pooled it
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403 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 4 countries.

Ivan DikicInstitute of Biochemistry II and Cluster of Excellence "Macromolecular Complexes", Goethe University Frankfurt, Germany. ivan.dikic@biochem2.de
Soichi Wakatsuki
Kylie J Walters
Goethe University Frankfurt · DEHigh Energy Accelerator Research Organization · JPUniversity of Minnesota · US

Funding

Linking proteasome activity to DNA repair through hHR23R01CA097004 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI WALTERS, KYLIE J. · 2003 to 2012
$2.4M
Structural Analysis of NAT Acetylation, Substrate Specificity and PolymorphismsR01CA117888 · NCI · UNIVERSITY OF MINNESOTA · PI WALTERS, KYLIE J. · 2007 to 2010
$900k
NCI NIH HHS CA097004NCI NIH HHS CA117888NCI NIH HHS R01 CA097004NCI NIH HHS R01 CA117888
6 · The paper itself

Abstract

Ubiquitin-binding domains (UBDs) are modular elements that bind non-covalently to the protein modifier ubiquitin. Recent atomic-level resolution structures of ubiquitin-UBD complexes have revealed some of the mechanisms that underlie the versatile functions of ubiquitin in vivo. The preferences of UBDs for ubiquitin chains of specific length and linkage are central to these functions. These preferences originate from multimeric interactions, whereby UBDs synergistically bind multiple ubiquitin molecules, and from contacts with regions that link ubiquitin molecules into a polymer. The sequence context of UBDs and the conformational changes that follow their binding to ubiquitin also contribute to ubiquitin signalling. These new structure-based insights provide strategies for controlling cellular processes by targeting ubiquitin-UBD interfaces.

Indexed as

AnimalsHumansModels, BiologicalModels, MolecularProtein BindingProtein ConformationProteinsProtein Structure, TertiaryStructure-Activity RelationshipUbiquitinUbiquitinationProteinsUbiquitin

Identifiers

PMID19773779
PMCPMC7359374
OpenAlexW2055390996

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.