Evidence map›Paper›PMID 19767469›Full record

ArticleApplied and environmental microbiology2009

Identification and classification of bcl genes and proteins of Bacillus cereus group organisms and their application in Bacillus anthracis detection and fingerprinting.

Tomasz A Leski, Clayton C Caswell, Marcin Pawlowski, David J Klinke, Janusz M Bujnicki, Sean J Hart, Slawomir Lukomski

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Prokaryotic Collagen-Like Proteins as Novel Biomaterials.Frontiers in bioengineering and biotechnology · 2022
    Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Tomasz A LeskiNova Research, Inc., Alexandria, Virginia 22308, USA.
Clayton C Caswell
Marcin Pawlowski
David J Klinke
Janusz M Bujnicki
Sean J Hart
Slawomir Lukomski
Adam Mickiewicz University in Poznań · PLInternational Institute of Molecular and Cell Biology · PLNova Research Company (United States) · USUnited States Naval Research Laboratory · USWest Virginia University · US

Funding

WVU &MU NEW FACULTY GRANTSP20RR016477 · NCRR · MARSHALL UNIVERSITY · PI RANKIN, GARY O · 2001 to 2011
$35.5M
Sc1 Proteins of S pyogenes: Biology and FunctionR01AI050666 · NIAID · WEST VIRGINIA UNIVERSITY · PI LUKOMSKI, SLAWOMIR · 2002 to 2005
$1.0M
High-Accuracy Protein Models Derived from Lower Resolution DataR01GM081680 · NIGMS · IOWA STATE UNIVERSITY · PI KLOCZKOWSKI, ANDRZEJ · 2007 to 2009
$763k
Noncanonical signaling and Emergent Trastuzumab Resistance in Breast CancerR15CA132124 · NCI · WEST VIRGINIA UNIVERSITY · PI KLINKE, DAVID JOHN · 2009 to 2012
$752k
NCI NIH HHS CA132124NCI NIH HHS R15 CA132124NCRR NIH HHS 5P20RR016477NCRR NIH HHS P20 RR016477NIAID NIH HHS AI50666NIAID NIH HHS R01 AI050666NIGMS NIH HHS GM081680NIGMS NIH HHS R01 GM081680
6 · The paper itself

Abstract

The Bacillus cereus group includes three closely related species, B. anthracis, B. cereus, and B. thuringiensis, which form a highly homogeneous subdivision of the genus Bacillus. One of these species, B. anthracis, has been identified as one of the most probable bacterial biowarfare agents. Here, we evaluate the sequence and length polymorphisms of the Bacillus collagen-like protein bcl genes as a basis for B. anthracis detection and fingerprinting. Five genes, designated bclA to bclE, are present in B. anthracis strains. Examination of bclABCDE sequences identified polymorphisms in bclB alleles of the B. cereus group organisms. These sequence polymorphisms allowed specific detection of B. anthracis strains by PCR using both genomic DNA and purified Bacillus spores in reactions. By exploiting the length variation of the bcl alleles it was demonstrated that the combined bclABCDE PCR products generate markedly different fingerprints for the B. anthracis Ames and Sterne strains. Moreover, we predict that bclABCDE length polymorphism creates unique signatures for B. anthracis strains, which facilitates identification of strains with specificity and confidence. Thus, we present a new diagnostic concept for B. anthracis detection and fingerprinting, which can be used alone or in combination with previously established typing platforms.

Indexed as

Bacterial Typing TechniquesDNA FingerprintingBacillus anthracisBacillus cereusBacterial ProteinsGenetic VariationMembrane GlycoproteinsModels, GeneticPolymorphism, GeneticRNA, Ribosomal, 16SBacterial ProteinsBclA protein, Bacillus anthracisBclB protein, Bacillus anthracisMembrane GlycoproteinsRNA, Ribosomal, 16S

Identifiers

PMID19767469
PMCPMC2786505
OpenAlexW2149677561

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.