Evidence map›Paper›PMID 19767417›Full record

ArticleGenome research2009

The completion of the Mammalian Gene Collection (MGC).

MGC Project Team, Gary Temple, Daniela S Gerhard, Rebekah Rasooly, Elise A Feingold, Peter J Good, Cristen Robinson, Allison Mandich, Jeffrey G Derge, Jeanne Lewis and 118 more

Abstract read
In one paragraph

Article in Genome research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Revised eutherian gene collections.BMC genomic data · 2022
    Article
  10. Article
  11. Review
  12. High throughput screening for compounds to the orphan nuclear receptor NR2F6.SLAS discovery : advancing life sciences R & D · 2022
    Article
  13. Article
  14. Article
  15. Evolutionarily conserved inhibitory uORFs sensitizeProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Secretome-Based Screening in Target Discovery.SLAS discovery : advancing life sciences R & D · 2020
    Review

23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

128 authors.

MGC Project Team
Gary Temple
Daniela S Gerhard
Rebekah Rasooly
Elise A Feingold
Peter J Good
Cristen Robinson
Allison Mandich
Jeffrey G Derge
Jeanne Lewis
Debonny Shoaf
Francis S Collins
Wonhee Jang
Lukas Wagner
Carolyn M Shenmen
Leonie Misquitta
Carl F Schaefer
Kenneth H Buetow
Tom I Bonner
Linda Yankie
Ming Ward
Lon Phan
Alex Astashyn
Garth Brown
Catherine Farrell
Jennifer Hart
Melissa Landrum
Bonnie L Maidak
Michael Murphy
Terence Murphy
Bhanu Rajput
Lillian Riddick
David Webb
Janet Weber
Wendy Wu
Kim D Pruitt
Donna Maglott
Adam Siepel
Brona Brejova
Mark Diekhans
Rachel Harte
Robert Baertsch
Jim Kent
David Haussler
Michael Brent
Laura Langton
Charles L G Comstock
Michael Stevens
Chaochun Wei
Marijke J van Baren
Kourosh Salehi-Ashtiani
Ryan R Murray
Lila Ghamsari
Elizabeth Mello
Chenwei Lin
Christa Pennacchio
Kirsten Schreiber
Nicole Shapiro
Amber Marsh
Elizabeth Pardes
Troy Moore
Anita Lebeau
Mike Muratet
Blake Simmons
David Kloske
Stephanie Sieja
James Hudson
Praveen Sethupathy
Michael Brownstein
Narayan Bhat
Joseph Lazar
Howard Jacob
Chris E Gruber
Mark R Smith
John McPherson
Angela M Garcia
Preethi H Gunaratne
Jiaqian Wu
Donna Muzny
Richard A Gibbs
Alice C Young
Gerard G Bouffard
Robert W Blakesley
Jim Mullikin
Eric D Green
Mark C Dickson
Alex C Rodriguez
Jane Grimwood
Jeremy Schmutz
Richard M Myers
Martin Hirst
Thomas Zeng
Kane Tse
Michelle Moksa
Merinda Deng
Kevin Ma
Diana Mah
Johnson Pang
Greg Taylor
Eric Chuah
Athena Deng
Keith Fichter
Anne Go
Stephanie Lee
Jing Wang
Malachi Griffith
Ryan Morin
Richard A Moore
Michael Mayo
Sarah Munro
Susan Wagner
Steven J M Jones
Robert A Holt
Marco A Marra
Sun Lu
Shuwei Yang
James Hartigan
Marcus Graf
Ralf Wagner
Stanley Letovksy
Jacqueline C Pulido
Keith Robison
Dominic Esposito
James Hartley
Vanessa E Wall
Ralph F Hopkins
Osamu Ohara
Stefan Wiemann

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
Inter- and Intra-Species Comparative SequencingZIBHG000196 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI THOMAS, JAMES · 2009 to 2025
$177.6M
Genetic analysis of type II diabetes in Finnish populationZIAHG000024 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI ERDOS, MICHAEL · 2009 to 2025
$38.2M
Comparative Genomics Unit ResearchZIAHG200330 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI MULLIKIN, JAMES C · 2009 to 2022
$17.9M
Bioinformatic Tools in Cancer ResearchZIHBC010470 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BUETOW, KENNETH · 2009 to 2012
$2.6M
NHGRI NIH HHS U54 HG003273PHS HHS N01-C0-12400
6 · The paper itself

Abstract

Since its start, the Mammalian Gene Collection (MGC) has sought to provide at least one full-protein-coding sequence cDNA clone for every human and mouse gene with a RefSeq transcript, and at least 6200 rat genes. The MGC cloning effort initially relied on random expressed sequence tag screening of cDNA libraries. Here, we summarize our recent progress using directed RT-PCR cloning and DNA synthesis. The MGC now contains clones with the entire protein-coding sequence for 92% of human and 89% of mouse genes with curated RefSeq (NM-accession) transcripts, and for 97% of human and 96% of mouse genes with curated RefSeq transcripts that have one or more PubMed publications, in addition to clones for more than 6300 rat genes. These high-quality MGC clones and their sequences are accessible without restriction to researchers worldwide.

Indexed as

Gene LibraryAnimalsCloning, MolecularComputational BiologyDNADNA, ComplementaryGenesHumansMammalsMiceNational Institutes of Health (U.S.)RatsReverse Transcriptase Polymerase Chain ReactionUnited StatesDNADNA, Complementary

Identifiers

PMID19767417
PMCPMC2792178

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.