Evidence map›Paper›PMID 19767386›Full record

ArticlePlant physiology2009

Metabolite sorting of a germplasm collection reveals the hydroxylase3 locus as a new target for maize provitamin A biofortification.

Ratnakar Vallabhaneni, Cynthia E Gallagher, Nicholas Licciardello, Abby J Cuttriss, Rena F Quinlan, Eleanore T Wurtzel

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
8.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 114 citations in OpenAlex.

  1. Article
  2. Article
  3. Genetic and molecular basis of carotenoid metabolism in cereals.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Review
  4. Carotenoid modifying enzymes in metazoans.Methods in enzymology · 2022
    Article
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  10. Structural basis for plant lutein biosynthesis from α-carotene.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Ratnakar VallabhaneniDepartment of Biological Sciences, Lehman College, City University of New York, Bronx, New York 10468, USA.
Cynthia E Gallagher
Nicholas Licciardello
Abby J Cuttriss
Rena F Quinlan
Eleanore T Wurtzel
The Graduate Center, CUNY · USLehman College · USCity University of New York · US

Funding

REGULATION OF PROVITAMIN A CAROTENOID BIOSYNTHESIS IN MAIZESC1GM081160 · NIGMS · HERBERT H. LEHMAN COLLEGE · PI WURTZEL, ELEANORE T · 2007 to 2010
$1.7M
NIGMS NIH HHS GM081160NIGMS NIH HHS GM08225NIGMS NIH HHS SC1 GM081160
6 · The paper itself

Abstract

Vitamin A deficiency, a global health burden, can be alleviated through provitamin A carotenoid biofortification of major crop staples such as maize (Zea mays) and other grasses in the Poaceae. If regulation of carotenoid biosynthesis was better understood, enhancement could be controlled by limiting beta-carotene hydroxylation to compounds with lower or no nonprovitamin A activity. Natural maize genetic diversity enabled identification of hydroxylation genes associated with reduced endosperm provitamin A content. A novel approach was used to capture the genetic and biochemical diversity of a large germplasm collection, representing 80% of maize genetic diversity, without having to sample the entire collection. Metabolite data sorting was applied to select a 10-line genetically diverse subset representing biochemical extremes for maize kernel carotenoids. Transcript profiling led to discovery of the Hydroxylase3 locus that coincidently mapped to a carotene quantitative trait locus, thereby prompting investigation of allelic variation in a broader collection. Three natural alleles in 51 maize lines explained 78% of variation and approximately 11-fold difference in beta-carotene relative to beta-cryptoxanthin and 36% of the variation and 4-fold difference in absolute levels of beta-carotene. A simple PCR assay to track and identify Hydroxylase3 alleles will be valuable for predicting nutritional content in genetically diverse cultivars found worldwide.

Indexed as

Quantitative Trait LociAllelesAmino Acid Sequencebeta CaroteneChromosome MappingDNA, PlantGene Expression ProfilingGenetic VariationHydroxylationMixed Function OxygenasesMolecular Sequence DataMultigene FamilyNutritive ValueOryzaPlant ProteinsSequence Alignmentbeta Carotenebeta-carotene hydroxylaseDNA, PlantMixed Function OxygenasesPlant Proteins

Identifiers

PMID19767386
PMCPMC2773064
OpenAlexW2124783267

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.